View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16389_low_23 (Length: 240)
Name: NF16389_low_23
Description: NF16389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16389_low_23 |
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| [»] scaffold2055 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 30031017 - 30030802
Alignment:
| Q |
19 |
tgtgacacattaatatttaataactcacctaaaatattgatgttttatttatttttattcgtaaattaataattttgaaagccaagagtctacgattaga |
118 |
Q |
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| T |
30031017 |
tgtgacacattaatctttaataactcacctaaaattttgatgttttatttatttttattcgtaaattaataattttgatagccaagagtctacgagtaga |
30030918 |
T |
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| Q |
119 |
aagataaaacatgaaatttttaacaccattattcttcttagtttggagcctctttgacttatttatgttctctattttattgggtttgtgtttcaggcag |
218 |
Q |
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| T |
30030917 |
aagataaaacatgaaa-ttttaacaccattattcttcttagtttggagcctctttgatttattaatgttctctattttattgggtttgtgtttcaggcag |
30030819 |
T |
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| Q |
219 |
ttgctagaataatctac |
235 |
Q |
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| T |
30030818 |
tagctaaaataatctac |
30030802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 68 - 235
Target Start/End: Complemental strand, 30047275 - 30047109
Alignment:
| Q |
68 |
tatttttattcgtaaattaataattttgaaagccaagagtctacgattagaaagataaaacatgaaatttttaacaccattattcttcttagtttggagc |
167 |
Q |
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|||||| |||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30047275 |
tattttcattcataaattaataattttgaaagcaaagagtctacgagtagaaagataaaacatgaaatttt-aacaccattattcttcttagtttggagc |
30047177 |
T |
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| Q |
168 |
ctctttgacttatttatgttctctattttattgggtttgtgtttcaggcagttgctagaataatctac |
235 |
Q |
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| T |
30047176 |
ctctttgatttattaatgttctctattttattgggtttgtgtttcaggcagtagctaaaataatctac |
30047109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 68 - 235
Target Start/End: Complemental strand, 30061616 - 30061450
Alignment:
| Q |
68 |
tatttttattcgtaaattaataattttgaaagccaagagtctacgattagaaagataaaacatgaaatttttaacaccattattcttcttagtttggagc |
167 |
Q |
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| T |
30061616 |
tattttcattcataaattaataattttgaaagcaaagagtctacgagtagaaagataaaacatgaaatttt-aacaccattattcttcttagtttggagc |
30061518 |
T |
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| Q |
168 |
ctctttgacttatttatgttctctattttattgggtttgtgtttcaggcagttgctagaataatctac |
235 |
Q |
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| T |
30061517 |
ctctttgatttattaatgttctctattttattgggtttgtgtttcaggcagtagctaaaataatctac |
30061450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 30227558 - 30227493
Alignment:
| Q |
169 |
tctttgacttatttatgttctctattttattgggtttgtgtttcaggcagttgctagaataatcta |
234 |
Q |
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| T |
30227558 |
tctttgatttattaatgttctctattttattgggtttgtgtttcaggtggtagctaaaataatcta |
30227493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2055 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: scaffold2055
Description:
Target: scaffold2055; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 135 - 235
Target Start/End: Complemental strand, 713 - 613
Alignment:
| Q |
135 |
tttttaacaccattattcttcttagtttggagcctctttgacttatttatgttctctattttattgggtttgtgtttcaggcagttgctagaataatcta |
234 |
Q |
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|||||||||||||||||||||||||||||||| || ||||| ||||| ||||||||| || ||| ||||||||||||||||||| |||| | ||||||| |
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| T |
713 |
tttttaacaccattattcttcttagtttggagtctatttgatttattaatgttctctgattaatttggtttgtgtttcaggcagtagctaaagtaatcta |
614 |
T |
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| Q |
235 |
c |
235 |
Q |
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| T |
613 |
c |
613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2055; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 148
Target Start/End: Complemental strand, 1033 - 929
Alignment:
| Q |
41 |
actcacctaaaatattgatgttttatttatttttattcgtaaattaataattttgaaagccaagagtctacgattagaaagataaaacatgaaattttta |
140 |
Q |
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|||| ||| |||| |||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |
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| T |
1033 |
actcgccttaaattttgatgttttatttatttttattcataaactaataattttgaaagctaagagtctacg--cgcaaagataaaacatgaaa-tttta |
937 |
T |
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| Q |
141 |
acaccatt |
148 |
Q |
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|||||||| |
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| T |
936 |
acaccatt |
929 |
T |
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