View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16389_low_26 (Length: 214)

Name: NF16389_low_26
Description: NF16389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16389_low_26
NF16389_low_26
[»] chr6 (2 HSPs)
chr6 (1-202)||(34260499-34260693)
chr6 (130-166)||(6829654-6829690)
[»] chr3 (1 HSPs)
chr3 (2-82)||(29642916-29642996)
[»] chr8 (5 HSPs)
chr8 (1-82)||(42503538-42503619)
chr8 (39-82)||(17925456-17925499)
chr8 (130-166)||(17942675-17942711)
chr8 (4-72)||(12202957-12203023)
chr8 (4-72)||(12447385-12447451)
[»] chr7 (2 HSPs)
chr7 (130-166)||(5956806-5956842)
chr7 (39-82)||(23158232-23158275)
[»] chr4 (1 HSPs)
chr4 (130-166)||(36385477-36385513)
[»] chr1 (1 HSPs)
chr1 (130-166)||(2367208-2367244)
[»] scaffold0402 (1 HSPs)
scaffold0402 (130-166)||(11230-11266)


Alignment Details
Target: chr6 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 34260499 - 34260693
Alignment:
Q  1 ggtgattttatagctctgaaaccttgaaaattccacctggagctgaaatggttatttcaaattttgaatggattaaaattaagttgaggttctgtttttt 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  34260499 ggtgattttatagctctgaaaccttgaaaattccccctggagctgaaatggttatttcaaattttgaatggattaaaattaggttgaggttctatttttt 34260598  T
Q  101 atnnnnnnnnnnnnnnnnnnntgtttaagaagagttgcttcattttcttgaaggaattcataccatnnnnnnnnntgtataagaagaattgagttgcttc 200  Q
    ||                   |||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||    
T  34260599 at-------aaaaaaaaaaaatgtttaagaagagttgcttcattttcttgaaggaattcataccataaaaaaaaatgtataagaagaattgagttgcttc 34260691  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 6829690 - 6829654
Alignment:
Q  130 aagagttgcttcattttcttgaaggaattcataccat 166  Q
    |||||||||||||||||||||||||||||||||||||    
T  6829690 aagagttgcttcattttcttgaaggaattcataccat 6829654  T

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Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 29642996 - 29642916
Alignment:
Q  2 gtgattttatagctctgaaaccttgaaaattccacctggagctgaaatggttatttcaaattttgaatggattaaaattaa 82  Q
    |||||||||||||||||||||||| |||||||||||  || ||||||||||| ||||||||||||||||||||||||||||    
T  29642996 gtgattttatagctctgaaaccttaaaaattccaccaagacctgaaatggttgtttcaaattttgaatggattaaaattaa 29642916  T

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Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 42503619 - 42503538
Alignment:
Q  1 ggtgattttatagctctgaaaccttgaaaattccacctggagctgaaatggttatttcaaattttgaatggattaaaattaa 82  Q
    ||||||||||||||||||||||||| ||||||||| |  || ||||||||||| ||||||||||||||||||||||||||||    
T  42503619 ggtgattttatagctctgaaaccttaaaaattccatcaagacctgaaatggttgtttcaaattttgaatggattaaaattaa 42503538  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 17925499 - 17925456
Alignment:
Q  39 ggagctgaaatggttatttcaaattttgaatggattaaaattaa 82  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  17925499 ggagctgaaatggttgtttcaaattttgaatggattaaaattaa 17925456  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 17942711 - 17942675
Alignment:
Q  130 aagagttgcttcattttcttgaaggaattcataccat 166  Q
    ||||||||||||||||||| |||||||||||||||||    
T  17942711 aagagttgcttcattttctggaaggaattcataccat 17942675  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 12202957 - 12203023
Alignment:
Q  4 gattttatagctctgaaaccttgaaaattccacctggagctgaaatggttatttcaaattttgaatgga 72  Q
    |||||||||||| ||||||||| ||| |||||||   | ||||||||||| ||||||||||||||||||    
T  12202957 gattttatagctttgaaacctt-aaatttccaccaa-atctgaaatggttgtttcaaattttgaatgga 12203023  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 12447385 - 12447451
Alignment:
Q  4 gattttatagctctgaaaccttgaaaattccacctggagctgaaatggttatttcaaattttgaatgga 72  Q
    |||||||||||| ||||||||| ||| |||||||   | ||||||||||| ||||||||||||||||||    
T  12447385 gattttatagctttgaaacctt-aaatttccaccaa-atctgaaatggttgtttcaaattttgaatgga 12447451  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 5956806 - 5956842
Alignment:
Q  130 aagagttgcttcattttcttgaaggaattcataccat 166  Q
    |||||||||||||||||||||||||||||||||||||    
T  5956806 aagagttgcttcattttcttgaaggaattcataccat 5956842  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 23158232 - 23158275
Alignment:
Q  39 ggagctgaaatggttatttcaaattttgaatggattaaaattaa 82  Q
    |||||| |||||||||||||||| ||||||||||||||||||||    
T  23158232 ggagctaaaatggttatttcaaactttgaatggattaaaattaa 23158275  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 36385513 - 36385477
Alignment:
Q  130 aagagttgcttcattttcttgaaggaattcataccat 166  Q
    |||||||||||||||||||||||||||||||||||||    
T  36385513 aagagttgcttcattttcttgaaggaattcataccat 36385477  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 2367244 - 2367208
Alignment:
Q  130 aagagttgcttcattttcttgaaggaattcataccat 166  Q
    |||||||||||||||||||||||||||||||||||||    
T  2367244 aagagttgcttcattttcttgaaggaattcataccat 2367208  T

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Target: scaffold0402 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 11230 - 11266
Alignment:
Q  130 aagagttgcttcattttcttgaaggaattcataccat 166  Q
    ||||||||||||||||||| |||||||||||||||||    
T  11230 aagagttgcttcattttctggaaggaattcataccat 11266  T

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