View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16389_low_27 (Length: 201)
Name: NF16389_low_27
Description: NF16389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16389_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 7235870 - 7235701
Alignment:
| Q |
12 |
agagagaagaagaaaagattaataatattatttgctgccttattttatttcattatcatcatcttagagtacaaagtcataaggtttgtgaaagtnnnnn |
111 |
Q |
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| T |
7235870 |
agagagaagaagaaaatgt-aataatattatttgctgccttattttatttcattatcatcatcttagagtacaaagtcataaggtttgtgaaagtaaaaa |
7235772 |
T |
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| Q |
112 |
nncaaatttattgggtatcaacaataaataaataaaagacagctcgtgaaatattcttacaaaaggtatat |
182 |
Q |
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| T |
7235771 |
aacaaatttattgggtatcaacaataaataaataaaagacagctcgtgaaatattcttacaaaaggtatat |
7235701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 29490109 - 29490048
Alignment:
| Q |
32 |
aataatattatttgctgccttattttatttcattatcatcatcttagagtacaaagtcataa |
93 |
Q |
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| T |
29490109 |
aataagattatttgctgccttatttcatttcaatatcataatcttagagtacaaagccataa |
29490048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 28423150 - 28423204
Alignment:
| Q |
32 |
aataatattatttgctgccttattttatttcattatcatcatcttagagtacaaa |
86 |
Q |
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| T |
28423150 |
aataatattatttgctgccttattttatttcattaccatcctgtaagagtacaaa |
28423204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 6069134 - 6069083
Alignment:
| Q |
36 |
atattatttgctgccttattttatttcattatcatcatcttagagtacaaag |
87 |
Q |
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| T |
6069134 |
atattatttgctatcttatttcatttcattaacatcatcttagagtacaaag |
6069083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 28718703 - 28718757
Alignment:
| Q |
32 |
aataatattatttgctgccttattttatttcattatcatcatcttagagtacaaa |
86 |
Q |
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|||||| |||||| || |||||||||||| ||||| |||||||||||||||||| |
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| T |
28718703 |
aataattttattttttgacttattttatttgattatgatcatcttagagtacaaa |
28718757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 6113467 - 6113430
Alignment:
| Q |
50 |
cttattttatttcattatcatcatcttagagtacaaag |
87 |
Q |
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| T |
6113467 |
cttatttgatttcattaccatcatcttagagtacaaag |
6113430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 6120359 - 6120322
Alignment:
| Q |
50 |
cttattttatttcattatcatcatcttagagtacaaag |
87 |
Q |
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| T |
6120359 |
cttatttgatttcattaccatcatcttagagtacaaag |
6120322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 797427 - 797355
Alignment:
| Q |
14 |
agagaagaagaaaagattaataatattatttgctgccttattttatttcattatcatcatcttagagtacaaa |
86 |
Q |
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| T |
797427 |
agagaagaagataatctaaataatatttgttgctgtcttatttcatttcattgtcattattttagagtacaaa |
797355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 15002335 - 15002295
Alignment:
| Q |
46 |
ctgccttattttatttcattatcatcatcttagagtacaaa |
86 |
Q |
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| T |
15002335 |
ctgccttattttatttcattatcattatcttagagtacaaa |
15002295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 20657350 - 20657411
Alignment:
| Q |
32 |
aataatattatttgctgccttattttatttcattatcatcatcttagagtacaaagtcataa |
93 |
Q |
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|||| |||||||| |||||| ||||||||| ||| |||||||||||||||| | ||||||| |
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| T |
20657350 |
aatattattattttctgcctaattttatttttttaccatcatcttagagtaccacgtcataa |
20657411 |
T |
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