View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16389_low_3 (Length: 629)

Name: NF16389_low_3
Description: NF16389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16389_low_3
NF16389_low_3
[»] chr8 (9 HSPs)
chr8 (22-544)||(7662004-7662526)
chr8 (143-264)||(8457527-8457648)
chr8 (158-264)||(34127640-34127747)
chr8 (179-268)||(4613395-4613483)
chr8 (149-327)||(16938870-16939045)
chr8 (144-212)||(23722246-23722314)
chr8 (149-243)||(44362262-44362356)
chr8 (149-224)||(13015441-13015517)
chr8 (147-183)||(35063659-35063695)
[»] chr5 (8 HSPs)
chr5 (149-327)||(9922865-9923041)
chr5 (174-303)||(33054054-33054183)
chr5 (179-303)||(35457340-35457458)
chr5 (178-222)||(29144392-29144436)
chr5 (192-263)||(8590130-8590201)
chr5 (178-243)||(26440085-26440150)
chr5 (143-222)||(24181418-24181498)
chr5 (179-243)||(36301222-36301286)
[»] chr2 (10 HSPs)
chr2 (149-327)||(15658772-15658949)
chr2 (149-309)||(35470241-35470403)
chr2 (190-262)||(8186308-8186380)
chr2 (149-268)||(29108749-29108868)
chr2 (149-268)||(6970470-6970588)
chr2 (148-267)||(28580399-28580518)
chr2 (211-268)||(45326701-45326758)
chr2 (190-263)||(25749683-25749756)
chr2 (174-243)||(33635689-33635758)
chr2 (149-263)||(8329624-8329737)
[»] chr4 (13 HSPs)
chr4 (176-268)||(3168394-3168486)
chr4 (149-268)||(1051760-1051879)
chr4 (149-268)||(7633155-7633273)
chr4 (188-268)||(1646593-1646673)
chr4 (149-264)||(49081279-49081394)
chr4 (185-265)||(33033220-33033300)
chr4 (141-224)||(36860259-36860341)
chr4 (176-243)||(47742789-47742856)
chr4 (173-263)||(12763404-12763494)
chr4 (176-238)||(42274339-42274401)
chr4 (149-263)||(53374972-53375086)
chr4 (146-183)||(16572637-16572674)
chr4 (174-218)||(48743462-48743506)
[»] chr1 (5 HSPs)
chr1 (176-268)||(6395464-6395556)
chr1 (177-268)||(19998561-19998652)
chr1 (178-243)||(35538956-35539021)
chr1 (173-263)||(49065979-49066068)
chr1 (276-327)||(19998356-19998405)
[»] chr3 (7 HSPs)
chr3 (175-268)||(14750333-14750426)
chr3 (149-297)||(55142286-55142435)
chr3 (217-268)||(30429402-30429453)
chr3 (180-263)||(34664266-34664349)
chr3 (185-263)||(40892802-40892880)
chr3 (177-258)||(4275481-4275562)
chr3 (192-265)||(37677368-37677441)
[»] chr6 (4 HSPs)
chr6 (149-268)||(8052180-8052299)
chr6 (178-264)||(29608451-29608537)
chr6 (174-222)||(31955651-31955699)
chr6 (150-183)||(1365389-1365422)
[»] chr7 (6 HSPs)
chr7 (146-268)||(8919352-8919476)
chr7 (149-268)||(25790097-25790215)
chr7 (177-238)||(30198319-30198380)
chr7 (178-243)||(40417684-40417749)
chr7 (196-236)||(35316212-35316252)
chr7 (147-183)||(42469031-42469067)
[»] scaffold0603 (1 HSPs)
scaffold0603 (192-243)||(7098-7149)
[»] scaffold0034 (1 HSPs)
scaffold0034 (146-185)||(95731-95770)


Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 22 - 544
Target Start/End: Complemental strand, 7662526 - 7662004
Alignment:
Q  22 tagtattcaaatctgcctctcctctcatattttgatataaattcatatagtactaaaaaatgcatttatgaaatggtatagaggagtgagtatattaaac 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7662526 tagtattcaaatctgcctctcctctcatattttgatataaattcatatagtactaaaaaatgcatttatgaaatggtatagaggagtgagtatattaaac 7662427  T
Q  122 ataaacatataatatatttataatggaaaatgttaaccggtgcctccgaggtactggttaagaaattattaaaggaaatatttctttggaaattgtgtat 221  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7662426 ataaacatataatatatttataatgggaaatgttaaccggtgcctctgaggtactggttaagaaattattaaaggaaatatttttttggaaattgtgtat 7662327  T
Q  222 tctgtattttaaaagttaaaaagttgcttttttcaatgcaaattatannnnnnnctttctacttttaacttcttaaccagtgctctaggggcaccagtta 321  Q
    ||| |||||||||||||| ||| ||| ||||||||||||||||||||       ||||||||||||||||| |||||||||||||  |||||||  ||||    
T  7662326 tctatattttaaaagttagaaaattgtttttttcaatgcaaattatatttttttctttctacttttaactttttaaccagtgctccgggggcactggtta 7662227  T
Q  322 acaagatccatttataatttagaggagggactacattaacattagacataaccatatgtataacttttgtcataatgatttaaaactttatacataagac 421  Q
    ||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7662226 acaagactcatttataatttagagaagggactacattaacattagacataaccatatgtataacttttgtcataatgatttaaaactttatacacaagac 7662127  T
Q  422 cattggcggagacaccacccggcaacccccggcactcgcccaggctcaatggatactctttttattccaattcaaaagcccattaacccacttaaannnn 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||         
T  7662126 cattggcggagacaccacccggcaacccccggcactcgcccaggctcaatggatactctttttattccaattcaatagcccattaacccacttaattttt 7662027  T
Q  522 nnnggataaattctaatattttt 544  Q
       ||||||||||||||||||||    
T  7662026 tttggataaattctaatattttt 7662004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 143 - 264
Target Start/End: Complemental strand, 8457648 - 8457527
Alignment:
Q  143 aatggaaaatgttaaccggtgcctccgaggtactggttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaa 242  Q
    ||||| ||||||||||| ||||| ||| |  |||| ||||| |||||  |||||||||||||  |||||||||||||||||| | ||||||||||| |||    
T  8457648 aatgggaaatgttaaccagtgcccccgggccactgattaaggaattagaaaaggaaatattttcttggaaattgtgtattctattttttaaaagttgaaa 8457549  T
Q  243 agttgcttttttcaatgcaaat 264  Q
     |||||| ||||||||| ||||    
T  8457548 tgttgctcttttcaatgtaaat 8457527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 264
Target Start/End: Original strand, 34127640 - 34127747
Alignment:
Q  158 ccggtgcctccgaggtactggttaagaaattattaaaggaaatatttct-ttggaaattgtgtattctgtattttaaaagttaaaaagttgcttttttca 256  Q
    |||||||| ||| || |||||||||| |||||  ||||||||||| | | |||||||||||||||||| | |||||||||||||||  ||||| ||||||    
T  34127640 ccggtgcccccggggcactggttaaggaattagaaaaggaaatatatttcttggaaattgtgtattctattttttaaaagttaaaatattgctcttttca 34127739  T
Q  257 atgcaaat 264  Q
    ||| ||||    
T  34127740 atgtaaat 34127747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 179 - 268
Target Start/End: Original strand, 4613395 - 4613483
Alignment:
Q  179 ttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttgcttttttcaatgcaaattata 268  Q
    ||||| |||||| |||| |||||||| |||| ||||| |||||||||  |||||||||||||||| ||| | |||| |||||||||||||    
T  4613395 ttaaggaattataaaagaaaatatttttttg-aaattatgtattctgagttttaaaagttaaaaaattgatctttttaatgcaaattata 4613483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 327
Target Start/End: Original strand, 16938870 - 16939045
Alignment:
Q  149 aaatgttaaccggtgcctccgaggtactggttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttgc 248  Q
    |||||||||||||||| || | |||| || ||||| |||||| | |||||||| |   ||| ||||||||||||||   |||| |||||||||||  |||    
T  16938870 aaatgttaaccggtgcttctggggtattgattaaggaattataagaggaaatagtgtcttgaaaattgtgtattctacttttttaaagttaaaaaagtgc 16938969  T
Q  249 ttttttcaatgcaaattatannnnnnnctttctacttttaacttcttaaccagtgctctaggggcaccagttaacaaga 327  Q
    | ||||||||  ||||| ||       ||||||||||||| ||||||||| |||||||  |||||||| || |||||||    
T  16938970 tgttttcaatataaatttta--tttttctttctacttttatcttcttaactagtgctc-cggggcaccggtcaacaaga 16939045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 23722246 - 23722314
Alignment:
Q  144 atggaaaatgttaaccggtgcctccgaggtactggttaagaaattattaaaggaaatatttctttggaa 212  Q
    |||| ||||||||||||||||| ||| || |||||||||| |||||  ||||||||||||  |||||||    
T  23722246 atgggaaatgttaaccggtgcccccggggcactggttaaggaattagaaaaggaaatattgttttggaa 23722314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 44362262 - 44362356
Alignment:
Q  149 aaatgttaaccggtgcctccgaggtactggttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaa 243  Q
    |||||||||||  || ||||| || | |||||||| |||||| ||| ||||||||   ||| |||||||||||||| | |||| |||||||||||    
T  44362262 aaatgttaaccaatgtctccggggcagtggttaaggaattataaaaagaaatattgtattgaaaattgtgtattctattttttgaaagttaaaaa 44362356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 13015517 - 13015441
Alignment:
Q  149 aaatgttaaccggtgcctccgagg-tactggttaagaaattattaaaggaaatatttctttggaaattgtgtattct 224  Q
    ||||||||||| ||||  |||||| ||||| |||||||||||| |||| |||||||   ||| ||||||||||||||    
T  13015517 aaatgttaaccagtgctcccgagggtactgattaagaaattataaaagtaaatattgtattgcaaattgtgtattct 13015441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 35063659 - 35063695
Alignment:
Q  147 gaaaatgttaaccggtgcctccgaggtactggttaag 183  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  35063659 gaaaatgttaactggtacctccgaggtactggttaag 35063695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 3e-40; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 149 - 327
Target Start/End: Complemental strand, 9923041 - 9922865
Alignment:
Q  149 aaatgttaaccggtgcctccgaggtactggttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttgc 248  Q
    ||||||||||||||||| ||  || || ||||||| ||||||||||| ||||||||||||| |||||||||||| | | |||||||||||||||||||||    
T  9923041 aaatgttaaccggtgcc-ccatggcacaggttaaggaattattaaagaaaatatttctttgaaaattgtgtattatatgttttaaaagttaaaaagttgc 9922943  T
Q  249 ttttttcaatgcaaattatannnnnnnctttctacttttaacttcttaaccagtgctctaggggcaccagttaacaaga 327  Q
    | |||||||| |||||||||       ||||||||||||||||||||||||||||| | ||||||||| ||||||||||    
T  9922942 tcttttcaattcaaattata-ttttttctttctacttttaacttcttaaccagtgccccaggggcaccggttaacaaga 9922865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 174 - 303
Target Start/End: Complemental strand, 33054183 - 33054054
Alignment:
Q  174 actggttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttgcttttttcaatgcaaattatannnnn 273  Q
    |||| |||||||||||||||| |||||||||  ||  |||||||||||||| ||||| |||| ||||||||||  | ||||||||  ||||||||         
T  33054183 actgattaagaaattattaaaagaaatattttctttaaaattgtgtattctatatttgaaaaattaaaaagttattcttttcaatttaaattatattttt 33054084  T
Q  274 nnctttctacttttaacttcttaaccagtg 303  Q
      ||||||||||||||||||||||| ||||    
T  33054083 ttctttctacttttaacttcttaactagtg 33054054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 179 - 303
Target Start/End: Original strand, 35457340 - 35457458
Alignment:
Q  179 ttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttgcttttttcaatgcaaattatannnnnnnctt 278  Q
    ||||| ||||||||||||||||||||  ||| ||||     ||||| | ||| |||||||||||||||| | ||||||||||||||||||       |||    
T  35457340 ttaaggaattattaaaggaaatattttcttgaaaat-----attctatgtttgaaaagttaaaaagttgttcttttcaatgcaaattata-ttttttctt 35457433  T
Q  279 tctacttttaacttcttaaccagtg 303  Q
    |||||||||||||||||||||||||    
T  35457434 tctacttttaacttcttaaccagtg 35457458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 29144436 - 29144392
Alignment:
Q  178 gttaagaaattattaaaggaaatatttctttggaaattgtgtatt 222  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||    
T  29144436 gttaagaaattataaaaggaaatatttttttggaaattgtgtatt 29144392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 263
Target Start/End: Original strand, 8590130 - 8590201
Alignment:
Q  192 aaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttgcttttttcaatgcaaa 263  Q
    |||| |||||||| ||||||||||||||||| |   ||||||||||||||||  || | |||||||||||||    
T  8590130 aaagaaaatatttttttggaaattgtgtattttaccttttaaaagttaaaaaagtgttattttcaatgcaaa 8590201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 26440085 - 26440150
Alignment:
Q  178 gttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaa 243  Q
    |||||| |||||| ||| ||||||| | ||| |||||||||||||||   ||||||||||||||||    
T  26440085 gttaaggaattataaaatgaaatatctttttagaaattgtgtattctactttttaaaagttaaaaa 26440150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 24181418 - 24181498
Alignment:
Q  143 aatggaaaatgttaaccggtgcctccgaggt-actggttaagaaattattaaaggaaatatttctttggaaattgtgtatt 222  Q
    ||||| ||||||||||| ||||| ||| ||  |||||||||| |||||| ||||||||||||   ||| ||||||||||||    
T  24181418 aatgggaaatgttaaccagtgcccccgcgggcactggttaaggaattataaaaggaaatattgtattgaaaattgtgtatt 24181498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 36301222 - 36301286
Alignment:
Q  179 ttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaa 243  Q
    ||||| |||||| |||| |||||||  ||| ||||||||||||| |  |||||||||||||||||    
T  36301222 ttaaggaattataaaagaaaatattattttagaaattgtgtattttacattttaaaagttaaaaa 36301286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 8e-38; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 149 - 327
Target Start/End: Original strand, 15658772 - 15658949
Alignment:
Q  149 aaatgttaaccggtgcctccgaggtactggttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttgc 248  Q
    ||||||||| | |||| |||| || |||| ||||| ||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||    
T  15658772 aaatgttaatcagtgcatccggggcactgattaaggaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgc 15658871  T
Q  249 ttttttcaatgcaaattatannnnnnnctttctacttttaacttcttaaccagtgctctaggggcaccagttaacaaga 327  Q
    | |||| |||||||||||||       ||||||||||||| ||| |||||||||||||  |||||| | ||||||||||    
T  15658872 tcttttgaatgcaaattata-ttttttctttctacttttagctttttaaccagtgctccgggggcatcggttaacaaga 15658949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 149 - 309
Target Start/End: Complemental strand, 35470403 - 35470241
Alignment:
Q  149 aaatgttaaccggtgcctccgaggtactggttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttgc 248  Q
    ||||||||||||||||||||| || |||||||||| ||||||||||||||||||||| ||| |||||||||||||| | ||||||||||||||||||||     
T  35470403 aaatgttaaccggtgcctccggggcactggttaaggaattattaaaggaaatatttccttgaaaattgtgtattctatgttttaaaagttaaaaagttg- 35470305  T
Q  249 ttttttcaatgcaaattata---nnnnnnnctttctacttttaacttcttaaccagtgctctag 309  Q
    |||||||||||| |||||||          ||||||||||||||||||||||| ||||| ||||    
T  35470304 ttttttcaatgccaattatatattttttttctttctacttttaacttcttaactagtgccctag 35470241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 190 - 262
Target Start/End: Original strand, 8186308 - 8186380
Alignment:
Q  190 ttaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttgcttttttcaatgcaa 262  Q
    |||||||||||||||  |||||||||||||||| | | |||||||||||||||||||||| ||||||||||||    
T  8186308 ttaaaggaaatattttcttggaaattgtgtattttatgttttaaaagttaaaaagttgctcttttcaatgcaa 8186380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 149 - 268
Target Start/End: Complemental strand, 29108868 - 29108749
Alignment:
Q  149 aaatgttaaccggtgcctccgaggtactggttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttgc 248  Q
    ||||||||| ||||||  ||| |  |||||||||| |||||| |||||||||||||  ||| ||||||||||||   | |||||||||||||||| ||||    
T  29108868 aaatgttaatcggtgctcccgcgacactggttaaggaattataaaaggaaatattttcttgaaaattgtgtatttcattttttaaaagttaaaaaattgc 29108769  T
Q  249 ttttttcaatgcaaattata 268  Q
    | |||||||| |||||||||    
T  29108768 tcttttcaatacaaattata 29108749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 268
Target Start/End: Complemental strand, 6970588 - 6970470
Alignment:
Q  149 aaatgttaaccggtgcctccgaggtactggttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttgc 248  Q
    |||||||||||||||||  ||||| | ||||| |  |||||| |||||||||  ||| |||||||||||||||| | | ||||||||||| |||| ||||    
T  6970588 aaatgttaaccggtgccctcgaggca-tggttgaagaattataaaaggaaatgattccttggaaattgtgtattttatgttttaaaagttcaaaaattgc 6970490  T
Q  249 ttttttcaatgcaaattata 268  Q
     |||| |||| |||||||||    
T  6970489 attttccaatacaaattata 6970470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 267
Target Start/End: Complemental strand, 28580518 - 28580399
Alignment:
Q  148 aaaatgttaaccggtgcctccgaggtactggttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttg 247  Q
    ||||||||||||  |  ||||||||| ||||||||  |||||| |||| |||||||| | | ||||||||||||| | | ||||||||||| |||| ||     
T  28580518 aaaatgttaaccaatatctccgaggtgctggttaaagaattataaaagaaaatatttttatagaaattgtgtattttattttttaaaagttgaaaaatta 28580419  T
Q  248 cttttttcaatgcaaattat 267  Q
    || |||||||| ||||||||    
T  28580418 ctcttttcaatacaaattat 28580399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 45326758 - 45326701
Alignment:
Q  211 aaattgtgtattctgtattttaaaagttaaaaagttgcttttttcaatgcaaattata 268  Q
    |||||||||||||| | |||||||||||||||||||||  |||| |||||||||||||    
T  45326758 aaattgtgtattctatcttttaaaagttaaaaagttgcacttttaaatgcaaattata 45326701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 190 - 263
Target Start/End: Original strand, 25749683 - 25749756
Alignment:
Q  190 ttaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttgcttttttcaatgcaaa 263  Q
    |||| ||||||||||  |||||||||||||||||| | |||| |||||||||||  || | |||||||||||||    
T  25749683 ttaagggaaatattttcttggaaattgtgtattctattttttgaaagttaaaaaagtgttcttttcaatgcaaa 25749756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 174 - 243
Target Start/End: Original strand, 33635689 - 33635758
Alignment:
Q  174 actggttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaa 243  Q
    |||||||| |||||||| |||| |||||||   ||||||||||||||||||   ||||||||||||||||    
T  33635689 actggttaggaaattataaaagaaaatattgtcttggaaattgtgtattctactttttaaaagttaaaaa 33635758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 8329624 - 8329737
Alignment:
Q  149 aaatgttaaccggtgcctccgaggtactggttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttgc 248  Q
    ||||||||| |||||| |||| | |||| |||||| ||||||  |||||||||||  |||||||||| ||||||||   |||| |||||||||| | ||     
T  8329624 aaatgttaatcggtgc-tccgggatacttgttaaggaattatataaggaaatattattttggaaattatgtattctactttttgaaagttaaaatggtgt 8329722  T
Q  249 ttttttcaatgcaaa 263  Q
    | |||| ||||||||    
T  8329723 tctttttaatgcaaa 8329737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 176 - 268
Target Start/End: Original strand, 3168394 - 3168486
Alignment:
Q  176 tggttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttgcttttttcaatgcaaattata 268  Q
    |||||||| ||||||||||||||||||||||||  |||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||    
T  3168394 tggttaaggaattattaaaggaaatatttctttaaaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaattata 3168486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 149 - 268
Target Start/End: Original strand, 1051760 - 1051879
Alignment:
Q  149 aaatgttaaccggtgcctccgaggtactggttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttgc 248  Q
    |||||||||||||| ||||   || |||| ||||| ||||||||||||||||||||| ||| |||||||||||||| | |||||||||||||||| ||||    
T  1051760 aaatgttaaccggtacctctagggcactgattaaggaattattaaaggaaatatttccttgaaaattgtgtattctatgttttaaaagttaaaaaattgc 1051859  T
Q  249 ttttttcaatgcaaattata 268  Q
    | ||||||||||||||||||    
T  1051860 tcttttcaatgcaaattata 1051879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 149 - 268
Target Start/End: Complemental strand, 7633273 - 7633155
Alignment:
Q  149 aaatgttaaccggtgcctccgaggtactggttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttgc 248  Q
    |||||||||||||||| |||| || |||||||||| |||||| |||||||||  || |||| |||||||||||||| |||||||||||||||||| ||||    
T  7633273 aaatgttaaccggtgc-tccgggggactggttaaggaattataaaaggaaatgattttttgaaaattgtgtattctatattttaaaagttaaaaaattgc 7633175  T
Q  249 ttttttcaatgcaaattata 268  Q
     |||||||||||||| ||||    
T  7633174 atttttcaatgcaaaatata 7633155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 188 - 268
Target Start/End: Complemental strand, 1646673 - 1646593
Alignment:
Q  188 tattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttgcttttttcaatgcaaattata 268  Q
    |||||||||||||||||||||| |||||||||||| | | |||||||||||||||||||||| ||||||||||||||||||    
T  1646673 tattaaaggaaatatttctttgaaaattgtgtattttatgttttaaaagttaaaaagttgctcttttcaatgcaaattata 1646593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 264
Target Start/End: Complemental strand, 49081394 - 49081279
Alignment:
Q  149 aaatgttaaccggtgcctccgaggtactggttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttgc 248  Q
    ||||||||||||||||| |   || |||| ||||  |||||  ||||||||||||| |||| |||||||||||||| | |||||||||||||||  ||||    
T  49081394 aaatgttaaccggtgccccttgggcactgattaaagaattagaaaaggaaatatttttttgaaaattgtgtattctattttttaaaagttaaaatattgc 49081295  T
Q  249 ttttttcaatgcaaat 264  Q
    | ||||||||| ||||    
T  49081294 tcttttcaatgtaaat 49081279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 185 - 265
Target Start/End: Complemental strand, 33033300 - 33033220
Alignment:
Q  185 aattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttgcttttttcaatgcaaatt 265  Q
    |||||| |||| ||||||||  ||||||||||||||||||   ||||||||| |||||| ||||| |||||||||||||||    
T  33033300 aattataaaagaaaatattttcttggaaattgtgtattctaagttttaaaagctaaaaaattgctcttttcaatgcaaatt 33033220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 141 - 224
Target Start/End: Original strand, 36860259 - 36860341
Alignment:
Q  141 ataatggaaaatgttaaccggtgcctccgaggtactggttaagaaattattaaaggaaatatttctttggaaattgtgtattct 224  Q
    |||||||||||||||||||| || | || ||  ||||||||||||||||| ||| ||||||||   ||||||||||||||||||    
T  36860259 ataatggaaaatgttaaccgatgtccccaagc-actggttaagaaattataaaaagaaatattgtattggaaattgtgtattct 36860341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 243
Target Start/End: Complemental strand, 47742856 - 47742789
Alignment:
Q  176 tggttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaa 243  Q
    |||||||| |||||| ||||||||||||   |||||| ||||||||| |  |||||||||||||||||    
T  47742856 tggttaaggaattataaaaggaaatattatcttggaatttgtgtattatacattttaaaagttaaaaa 47742789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 173 - 263
Target Start/End: Complemental strand, 12763494 - 12763404
Alignment:
Q  173 tactggttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttgcttttttcaatgcaaa 263  Q
    ||||||||||| |||||| |||| |||||||  |||||||| ||||||||||   |||| |||||||| ||  || | |||||||||||||    
T  12763494 tactggttaaggaattataaaagaaaatattgttttggaaactgtgtattctactttttgaaagttaagaaagtgttattttcaatgcaaa 12763404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 42274401 - 42274339
Alignment:
Q  176 tggttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagtt 238  Q
    |||||||| |||||  ||||||||||||| |||| ||||||||| |||| | |||||||||||    
T  42274401 tggttaagtaattagaaaaggaaatatttttttgaaaattgtgtgttctattttttaaaagtt 42274339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 149 - 263
Target Start/End: Complemental strand, 53375086 - 53374972
Alignment:
Q  149 aaatgttaaccggtgcctccgaggtactggttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttgc 248  Q
    ||||||||||  ||||| ||| || ||| ||||||  | ||| ||||||||||||   ||||||||||||||||||   ||||||||||| ||||  ||     
T  53375086 aaatgttaacaagtgcccccggggcacttgttaagggaatataaaaggaaatattctcttggaaattgtgtattctactttttaaaagttgaaaaagtgt 53374987  T
Q  249 ttttttcaatgcaaa 263  Q
    |||||| ||||||||    
T  53374986 ttttttaaatgcaaa 53374972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 16572674 - 16572637
Alignment:
Q  146 ggaaaatgttaaccggtgcctccgaggtactggttaag 183  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  16572674 ggaaaatgctaaccggtgcctccgaggcactggttaag 16572637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 48743462 - 48743506
Alignment:
Q  174 actggttaagaaattattaaaggaaatatttctttggaaattgtg 218  Q
    ||||||||||||||||| ||||||||||||   ||||||||||||    
T  48743462 actggttaagaaattataaaaggaaatattgtattggaaattgtg 48743506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 176 - 268
Target Start/End: Original strand, 6395464 - 6395556
Alignment:
Q  176 tggttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttgcttttttcaatgcaaattata 268  Q
    |||||||| ||||||||||| |||||||| |||| |||||||||||| | | |||||||||||||||||||| | ||||||||||||||||||    
T  6395464 tggttaaggaattattaaagaaaatatttttttgaaaattgtgtattttatgttttaaaagttaaaaagttgttcttttcaatgcaaattata 6395556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 268
Target Start/End: Complemental strand, 19998652 - 19998561
Alignment:
Q  177 ggttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttgcttttttcaatgcaaattata 268  Q
    ||||||| ||| || |||| ||||| ||||||| |||||||||||||| |||||||||||||||||| |||   ||||||||||| ||||||    
T  19998652 ggttaaggaatcataaaagaaaataattctttgaaaattgtgtattctatattttaaaagttaaaaaattgtacttttcaatgcatattata 19998561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 35538956 - 35539021
Alignment:
Q  178 gttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaa 243  Q
    ||||||||||||| ||| ||||||||  |||||||| |||||||| | | ||||||||||||||||    
T  35538956 gttaagaaattataaaatgaaatattgttttggaaactgtgtattttattttttaaaagttaaaaa 35539021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 173 - 263
Target Start/End: Complemental strand, 49066068 - 49065979
Alignment:
Q  173 tactggttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttgcttttttcaatgcaaa 263  Q
    |||| ||||||||||||| |||| |||| | | ||||||||||||||||| |   ||||||||||||||||  |  |||||||||||||||    
T  49066068 tactcgttaagaaattataaaagaaaatttat-tttggaaattgtgtatttttctttttaaaagttaaaaaagtctttttttcaatgcaaa 49065979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 276 - 327
Target Start/End: Complemental strand, 19998405 - 19998356
Alignment:
Q  276 ctttctacttttaacttcttaaccagtgctctaggggcaccagttaacaaga 327  Q
    |||||||||||||  |||||||||||||| |  |||||||||||||||||||    
T  19998405 ctttctacttttagtttcttaaccagtgccc--ggggcaccagttaacaaga 19998356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 175 - 268
Target Start/End: Original strand, 14750333 - 14750426
Alignment:
Q  175 ctggttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttgcttttttcaatgcaaattata 268  Q
    ||||||||| |||||| | |||||||  ||| |||||||||||||||||| |||||||||||||||||| ||||  |||||||| |||||||||    
T  14750333 ctggttaaggaattataagaggaaatgattccttggaaattgtgtattctatattttaaaagttaaaaatttgcacttttcaatacaaattata 14750426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 149 - 297
Target Start/End: Complemental strand, 55142435 - 55142286
Alignment:
Q  149 aaatgttaaccggtgcctccgaggtactggttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttgc 248  Q
    ||||||||||||||| | |||   ||||||||||  |||||| |||| |||||||| ||||||||||||||||||| | |||| ||| ||||||||| |     
T  55142435 aaatgttaaccggtgtccccggaatactggttaaagaattataaaagaaaatatttttttggaaattgtgtattctatgttttgaaatttaaaaagtcga 55142336  T
Q  249 ttttttcaatgcaaattatannnnnnnc-tttctacttttaacttcttaa 297  Q
    | |||||||||||| |||||       | |||||||||||||||||||||    
T  55142335 tcttttcaatgcaagttatatatctttcatttctacttttaacttcttaa 55142286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 30429453 - 30429402
Alignment:
Q  217 tgtattctgtattttaaaagttaaaaagttgcttttttcaatgcaaattata 268  Q
    |||||||| | |||||||||||||||  ||||||||||||||||||||||||    
T  30429453 tgtattctatgttttaaaagttaaaatattgcttttttcaatgcaaattata 30429402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 180 - 263
Target Start/End: Original strand, 34664266 - 34664349
Alignment:
Q  180 taagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttgcttttttcaatgcaaa 263  Q
    ||||||||||| | |||||||||||  ||||||||| |||||||| | ||||||||||| |||| |  || |||||||||||||    
T  34664266 taagaaattataataggaaatattttattggaaattatgtattctattttttaaaagttgaaaaatgactcttttcaatgcaaa 34664349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 40892802 - 40892880
Alignment:
Q  185 aattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttgcttttttcaatgcaaa 263  Q
    |||||| |||||||||||||  ||||||||||||||||||   |||| |||||||| ||  || | |||||||||||||    
T  40892802 aattataaaaggaaatattttcttggaaattgtgtattctactttttgaaagttaataaagtgttcttttcaatgcaaa 40892880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 4275481 - 4275562
Alignment:
Q  177 ggttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttgcttttttcaat 258  Q
    ||||||| |||||| | ||||||   ||| ||| |||||||||||||| | |||||||||||||||| ||||  ||||||||    
T  4275481 ggttaaggaattataagaggaaacgattccttgaaaattgtgtattctatgttttaaaagttaaaaaattgcacttttcaat 4275562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 265
Target Start/End: Original strand, 37677368 - 37677441
Alignment:
Q  192 aaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttgcttttttcaatgcaaatt 265  Q
    |||||||||||||  ||| |||||||||||||| | ||||||||||| |||  ||||| || |||||| |||||    
T  37677368 aaaggaaatattttcttgaaaattgtgtattctattttttaaaagttgaaatattgctcttgtcaatgtaaatt 37677441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 149 - 268
Target Start/End: Original strand, 8052180 - 8052299
Alignment:
Q  149 aaatgttaaccggtgcctccgaggt-actggttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttg 247  Q
    ||||||||||||||| | ||| ||| |||| |||||||||||| |||||||||  ||| |||||||||||||||||| | ||||||||||| ||||||||    
T  8052180 aaatgttaaccggtgtccccggggtcactgattaagaaattataaaaggaaattattccttggaaattgtgtattctatgttttaaaagtt-aaaagttg 8052278  T
Q  248 cttttttcaatgcaaattata 268  Q
    |  ||||||||  ||||||||    
T  8052279 cacttttcaataaaaattata 8052299  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 264
Target Start/End: Original strand, 29608451 - 29608537
Alignment:
Q  178 gttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttgcttttttcaatgcaaat 264  Q
    ||||||||||||  ||||||||||| | |||||||||| |||||||| | |||||||||||||||  ||| | ||||||||| ||||    
T  29608451 gttaagaaattaaaaaaggaaatatatttttggaaattatgtattctattttttaaaagttaaaatattgttcttttcaatgtaaat 29608537  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 31955651 - 31955699
Alignment:
Q  174 actggttaagaaattattaaaggaaatatttctttggaaattgtgtatt 222  Q
    ||||||||| ||||||| ||||||||||||| |||| ||||||||||||    
T  31955651 actggttaataaattataaaaggaaatatttatttgaaaattgtgtatt 31955699  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 183
Target Start/End: Original strand, 1365389 - 1365422
Alignment:
Q  150 aatgttaaccggtgcctccgaggtactggttaag 183  Q
    |||||||||||||||||| |||||||||||||||    
T  1365389 aatgttaaccggtgcctctgaggtactggttaag 1365422  T

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Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 146 - 268
Target Start/End: Original strand, 8919352 - 8919476
Alignment:
Q  146 ggaaaatgttaaccggtgcctccgaggtac--tggttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagtt-aaaa 242  Q
    ||||||||||||||||||| ||||  ||||  |||||||| |||||| |||||||||  || |||| ||||||| |||||| ||||||||||||| ||||    
T  8919352 ggaaaatgttaaccggtgc-tccggagtacactggttaaggaattataaaaggaaatgattttttgaaaattgtatattctatattttaaaagttaaaaa 8919450  T
Q  243 agttgcttttttcaatgcaaattata 268  Q
    | |||| |||||||||||||| ||||    
T  8919451 aattgcatttttcaatgcaaaatata 8919476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 268
Target Start/End: Complemental strand, 25790215 - 25790097
Alignment:
Q  149 aaatgttaaccggtgcctccgaggtactggttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaagttgc 248  Q
    ||||||||||||||||| |||||  |||| |||||||||||| |||| ||||||||  || |||||||| || |||   |||| |||||| |||| ||||    
T  25790215 aaatgttaaccggtgcc-ccgagacactgattaagaaattataaaagaaaatattttcttagaaattgtatactctaattttttaaagttgaaaaattgc 25790117  T
Q  249 ttttttcaatgcaaattata 268  Q
    | |||||||| |||||||||    
T  25790116 tcttttcaatacaaattata 25790097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 30198319 - 30198380
Alignment:
Q  177 ggttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagtt 238  Q
    ||||||| |||||  |||||||||||||  || ||||||||||||||| | |||||||||||    
T  30198319 ggttaaggaattagaaaaggaaatattttcttagaaattgtgtattctattttttaaaagtt 30198380  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 40417749 - 40417684
Alignment:
Q  178 gttaagaaattattaaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaa 243  Q
    |||||| |||||| |||| |||||||  |||||||||||||| |||| | |||| |||||||||||    
T  40417749 gttaaggaattataaaagaaaatattgttttggaaattgtgttttctattttttgaaagttaaaaa 40417684  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 35316252 - 35316212
Alignment:
Q  196 gaaatatttctttggaaattgtgtattctgtattttaaaag 236  Q
    |||| |||| ||||||||||||||||||| |||||||||||    
T  35316252 gaaacatttttttggaaattgtgtattctatattttaaaag 35316212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 42469067 - 42469031
Alignment:
Q  147 gaaaatgttaaccggtgcctccgaggtactggttaag 183  Q
    |||||||||||| |||||||||||||||||| |||||    
T  42469067 gaaaatgttaactggtgcctccgaggtactgtttaag 42469031  T

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Target: scaffold0603 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 7098 - 7149
Alignment:
Q  192 aaaggaaatatttctttggaaattgtgtattctgtattttaaaagttaaaaa 243  Q
    |||||||||| ||  ||| |||||||||||||| ||||||||||||||||||    
T  7098 aaaggaaataatttcttgaaaattgtgtattctatattttaaaagttaaaaa 7149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 95770 - 95731
Alignment:
Q  146 ggaaaatgttaaccggtgcctccgaggtactggttaagaa 185  Q
    |||||||| ||||||||||| |||||||||||||||||||    
T  95770 ggaaaatgctaaccggtgcccccgaggtactggttaagaa 95731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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