View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16389_low_9 (Length: 383)
Name: NF16389_low_9
Description: NF16389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16389_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 162 - 375
Target Start/End: Original strand, 36085651 - 36085864
Alignment:
| Q |
162 |
atcagtaaaacttgcctatcaaattcctgtatttagcaaacttaaacattcaaataagtatatcacacacgcaaaggatgaaagacaaacacaataggga |
261 |
Q |
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| T |
36085651 |
atcagtaaaacttgcctatcaaattcctgtatttagcaaacttaaacattcaaataagtatatcacacacgcaaaggatgaaagacaaacacaataggga |
36085750 |
T |
|
| Q |
262 |
atctgacctcattcatatcgtgtgccatgtttttcaaagtatccaatccttctacaatcacatccaaaccttcatcctaaaagattcatataattagatt |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36085751 |
atctgacctcattcatatcgtgtgccatgtttttcaaagtatccaatccttctacaatcacatccaaaccttcatcctaaaagattcatataattagatt |
36085850 |
T |
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| Q |
362 |
cgagatgatgtcca |
375 |
Q |
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||| |||||||||| |
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| T |
36085851 |
cgaaatgatgtcca |
36085864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 36083990 - 36084136
Alignment:
| Q |
16 |
aatgtgatgattggcgtaagtgtcacttcctatgnnnnnnntagtgaaaaagaactcttatttaggaatgagaacaagatacacaattcaaatgagatat |
115 |
Q |
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| T |
36083990 |
aatgtgatgattggcgtaagtgtcacttcctatgaaaaaaataatgaaaaagaactcttatt-aggaatgagaacaagatacacaattcaaatgagatat |
36084088 |
T |
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| Q |
116 |
attttttcatagatttattaataaacttctcttatcatttaagaatat |
163 |
Q |
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| T |
36084089 |
attttttcatagatttattaataaacttttcttatcatttaagaatat |
36084136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 36069776 - 36069851
Alignment:
| Q |
86 |
agaacaagatacacaattcaaatgagatatattttttcatagatttattaat-aaacttctcttatcatttaagaa |
160 |
Q |
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|||||||||||||||||| |||||||||||||||| |||||||||||||||| ||| |||||| |||| ||||||| |
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| T |
36069776 |
agaacaagatacacaattaaaatgagatatattttatcatagatttattaataaaaattctctcatcagttaagaa |
36069851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 170 - 375
Target Start/End: Complemental strand, 40730349 - 40730144
Alignment:
| Q |
170 |
aacttgcctatcaaattcctgtatttagcaaacttaaacattcaaataagtatatcacacacgcaaaggatgaaagacaaacacaatagggaatctgacc |
269 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40730349 |
aacttgcctatcaaattcctgcatttgacaaacttaaacattcaaataaatatatcacacacgcaaaggatgaaagacaaacacaataggcaatctgacc |
40730250 |
T |
|
| Q |
270 |
tcattcatatcgtgtgccatgtttttcaaagtatccaatccttctacaatcacatccaaaccttcatcctaaaagattcatataattagattcgagatga |
369 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
40730249 |
tcgttcatatcgtgtgccatgtttttcaaagtatccaatccttctgcaatcacatccaaaccttcatcctaaaagattcatataattagatttgaaatga |
40730150 |
T |
|
| Q |
370 |
tgtcca |
375 |
Q |
| |
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|||||| |
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|
| T |
40730149 |
tgtcca |
40730144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 264 - 340
Target Start/End: Original strand, 28511073 - 28511149
Alignment:
| Q |
264 |
ctgacctcattcatatcgtgtgccatgtttttcaaagtatccaatccttctacaatcacatccaaaccttcatccta |
340 |
Q |
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|||||||||||||| || || ||||||| |||||||||||||||||||||| |||||| ||||||||||| |||||| |
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| T |
28511073 |
ctgacctcattcatgtcatgcgccatgtctttcaaagtatccaatccttctgcaatcatatccaaaccttgatccta |
28511149 |
T |
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