View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1638_high_3 (Length: 498)
Name: NF1638_high_3
Description: NF1638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1638_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 488
Target Start/End: Complemental strand, 14769361 - 14768886
Alignment:
| Q |
17 |
atttttcagtttcaccgctcatccaaacatacacttgtacc---------atatgatatttcattttcaccactgatcccaacatata--cttgtataat |
105 |
Q |
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| T |
14769361 |
atttttcagtttcaccgctcatctaaacatatacttgtaccgaatgtaccatatgatatttcattttcaccggtgatcccaacatatatacttgtacaat |
14769262 |
T |
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| Q |
106 |
attaaagattcgttaannnnnnnnnnnnnnnnnnnaaaaagtgaactttatattatggattatttaaaagagtttcaattcaataaatatatacaaaatt |
205 |
Q |
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| T |
14769261 |
attaaagattcgttaattttttttttaa-------aaaaagtgaactttatattatggattatttaaaagagtttcaagttaataattataaacaaaatt |
14769169 |
T |
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| Q |
206 |
aatagactacatgcgtataaaaataattaattattcaactggtcagagtttgatttaacgaaagaagttaaattttcacatcacatcacattgaaataat |
305 |
Q |
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| T |
14769168 |
aatagactacatgcttataaaaataattaattattcgactggtcagagtttggtttaacgaaagaagttaaactttcacatcacatcacattgaaataac |
14769069 |
T |
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| Q |
306 |
gtttaaatcttaggaatggaagtgttcacgtttagtgtttctactgaatagaatctaaggaaaccaaaataatatcctaaaataannnnnnnaggaaaca |
405 |
Q |
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| T |
14769068 |
gtttaaatcttaggaatggaagtgtccacgtttagtgtttctaccgaatagaatctaaggaaaccaaaataatatcctaaaataatttttttaggaaaca |
14768969 |
T |
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| Q |
406 |
caaaataattggttattcaaaattattattatgaatatcgttgaaaagttctactttgttatttacattatttatcatttttt |
488 |
Q |
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| T |
14768968 |
caaaataattggttattcacaattattattatgaatatcgtttaaaagttctactttgttatttacattatttatcttttttt |
14768886 |
T |
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