View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1638_high_4 (Length: 346)
Name: NF1638_high_4
Description: NF1638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1638_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 17 - 341
Target Start/End: Complemental strand, 39812959 - 39812635
Alignment:
| Q |
17 |
atttgtttgatacattatcaagcaacatgttctcatgatttgaaccagaatcttgcttccttatcttgcttaagacacgtttcacttggtcttcgttact |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39812959 |
atttgtttgatacattatcaagcaacatgttctcatgatttgaaccagaatcttgcttccttatcttgcttaagacacgtttcacttggtcttcgttact |
39812860 |
T |
|
| Q |
117 |
gccaccgcttgatgcagcaaattcaccatcaattgaaagcctaagtgacatgtcctgaacatccttaagtgaatcattgaaagactcttcaacatctaca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39812859 |
gccaccgcttgatgcagcaaattcaccatcaattgaaagcctaagtgacatgtcctgaacatccttaagtgaatcattgaaagactcttcaacatctaca |
39812760 |
T |
|
| Q |
217 |
tcatcttcagtagtagtagtttgccattgtggatgcctcattctacacgcatccacgcgtgtcaaataagttcggcagtgttccggccacgagaaaaggt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39812759 |
tcatcttcagtagtagtagtttgccattgtggatgcctcattctacacgcatccacgcgtgtcaaataagttcggcaatgttccggccacgagaaaaggt |
39812660 |
T |
|
| Q |
317 |
gtatattcttccaacctttgcttct |
341 |
Q |
| |
|
|||||||||||||||| ||| |||| |
|
|
| T |
39812659 |
gtatattcttccaaccattgtttct |
39812635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 139 - 329
Target Start/End: Complemental strand, 15800825 - 15800635
Alignment:
| Q |
139 |
tcaccatcaattgaaagcctaagtgacatgtcctgaacatccttaagtgaatcattgaaagactcttcaacatctacatcatcttcagtagtagtagttt |
238 |
Q |
| |
|
||||||||||| || |||||||| ||||||||||| || || ||||||||||||||||| |||| || ||| || ||| ||| | | ||||||||||| |
|
|
| T |
15800825 |
tcaccatcaatagagagcctaagagacatgtcctgcacgtctttaagtgaatcattgaatgactggtcgacagttatatcgtctcctggagtagtagttt |
15800726 |
T |
|
| Q |
239 |
gccattgtggatgcctcattctacacgcatccacgcgtgtcaaataagttcggcagtgttccggccacgagaaaaggtgtatattcttcca |
329 |
Q |
| |
|
||||||||||||||||||| || || || | || || ||||||||||| || |||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
15800725 |
gccattgtggatgcctcatcctgcaagccgcgactcgagtcaaataagtacgacagtgttcgggccacgagaataggtgtatattcttcca |
15800635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University