View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1638_high_8 (Length: 249)
Name: NF1638_high_8
Description: NF1638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1638_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 10 - 141
Target Start/End: Complemental strand, 16973426 - 16973296
Alignment:
| Q |
10 |
aagaatattttttaagaatatgaccaccgtgaaatcaattgatgattcaattgtttctttttatgcattcaaattcacatcatatgatnnnnnnntttaa |
109 |
Q |
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| T |
16973426 |
aagaatattttttaagaatatgaccaccgtgaaatcaatcgatgattcaattatttctttttatgcattcaaattcacatcacatgat-aaaaaatttaa |
16973328 |
T |
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| Q |
110 |
agctaagaatgaagattcatacttaattgata |
141 |
Q |
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| T |
16973327 |
agttaagaatgaatattcatacttaattgata |
16973296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 16973228 - 16973187
Alignment:
| Q |
208 |
cttacattgaatattaaactaagctttcatattcttttaaga |
249 |
Q |
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| T |
16973228 |
cttacattgaatattaacctaagctttcatattcttttaaga |
16973187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 35343475 - 35343393
Alignment:
| Q |
15 |
tattttttaagaatatgaccaccgtgaaatcaattgatgattcaattgtttctttttatgcattcaaattcacatcatatgat |
97 |
Q |
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| T |
35343475 |
tattctttaagaatatgaccaccatggagtcgattgatgattcaattgttcctttttgtgcattcaaattcacatcttatgat |
35343393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 141
Target Start/End: Original strand, 5249781 - 5249894
Alignment:
| Q |
27 |
atatgaccaccgtgaaatcaattgatgattcaattgtttctttttatgcattcaaattcacatcatatgatnnnnnnntttaaagctaagaatgaagatt |
126 |
Q |
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| T |
5249781 |
atatgaccaccgtggaaccgattgatgactcaattgttcctttttatgcattcaactttacatcatatgat-gaaatttttaaagttaagaatgaagatt |
5249879 |
T |
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| Q |
127 |
catacttaattgata |
141 |
Q |
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|| || ||||||||| |
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| T |
5249880 |
cacacctaattgata |
5249894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 5812930 - 5812980
Alignment:
| Q |
47 |
attgatgattcaattgtttctttttatgcattcaaattcacatcatatgat |
97 |
Q |
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| T |
5812930 |
attgatgactcaattgttcctttttatgcattcaagtttacatcatatgat |
5812980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 15388831 - 15388881
Alignment:
| Q |
47 |
attgatgattcaattgtttctttttatgcattcaaattcacatcatatgat |
97 |
Q |
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| T |
15388831 |
attgatgactcagttgttcctttttatgtattcaagttcacatcatatgat |
15388881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 34738979 - 34739098
Alignment:
| Q |
15 |
tattttttaagaatatgaccaccgtgaaatcaattgatgattcaattgtttctttttatgcattcaaattcacatcatatgatnnnnnnntttaaagcta |
114 |
Q |
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| T |
34738979 |
tattctttaagaatataatcaccatgaaatcagttgatgattcaattattcatttttatgcatttaagttcacttcgtatgat-aaaatttttaaagcca |
34739077 |
T |
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| Q |
115 |
agaatgaagattcatacttaa |
135 |
Q |
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| T |
34739078 |
agaatgaagatttatacttaa |
34739098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 33470761 - 33470681
Alignment:
| Q |
47 |
attgatgattcaattgtttctttttatgcattcaaattcacatcatatgatnnnnnnntttaaagctaagaatgaagattca |
128 |
Q |
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| T |
33470761 |
attgatgactcagttgttcttttttatgcattcaagttcacatcatatgat-gaaaattttaaagttaagaatgaagattca |
33470681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 32905759 - 32905809
Alignment:
| Q |
47 |
attgatgattcaattgtttctttttatgcattcaaattcacatcatatgat |
97 |
Q |
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| T |
32905759 |
attgatgactcagttgttcctttttatgcattcaagttcatatcatatgat |
32905809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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