View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1638_low_1 (Length: 613)
Name: NF1638_low_1
Description: NF1638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1638_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-144; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 13 - 284
Target Start/End: Complemental strand, 43557000 - 43556729
Alignment:
| Q |
13 |
cagagaaagggtgatgaacaagaagatattttacgtcgtggaagagaatgagaatctttgaaagatatgacatttgaagggtcgtcgatggtttgagaag |
112 |
Q |
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| T |
43557000 |
cagagaaagggtgatgaacaagaagatattttacgtcgtggaagagaatgagaatctttgaaagatatgatatctgaagggtcgtcgatggtttgagaag |
43556901 |
T |
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| Q |
113 |
gtttgggtttggaaatagggtgaaagggtagtacagtagtgttggaggagatggggggtgcaaatagtggtttttccataacatcagttaagtgttgttt |
212 |
Q |
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| T |
43556900 |
gtttgggtttggaaatagggtgaaagggtagtacagtagtgttggaggagatggggggtgcaaatagcggtttttccataacatcagttaagtgttgttt |
43556801 |
T |
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| Q |
213 |
ggttttgcaggatccaaatgaggatcggaacatgcgagagattctcattttgagacggttttggttttccat |
284 |
Q |
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| T |
43556800 |
ggttttgcaggatccaaatgaggatcggaacatgcgagagattctcattttgagacggttttggttttccat |
43556729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 444 - 592
Target Start/End: Complemental strand, 43556562 - 43556414
Alignment:
| Q |
444 |
cttaaatttatgctattttatttcttgtcgtttagtttgttgggtctgatttgtacagtgagtgaatcaatgagagaaattcgatttggtaaacagtgct |
543 |
Q |
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| T |
43556562 |
cttaaatttatgctattttatttcttgtcgtttagtttgttgggtctgatttgtacagtgagtgaatcaatgagagaaattcgatttggtaaacagtgct |
43556463 |
T |
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| Q |
544 |
aattgaccttcttctgcttctggggtttgcctttaaacgtgagtgacca |
592 |
Q |
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| T |
43556462 |
aattgaccttcttctgcttctggggtttgcctttaaacgtgcgtgacca |
43556414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 332 - 407
Target Start/End: Complemental strand, 43556672 - 43556597
Alignment:
| Q |
332 |
agatagggtaatataaatgcatgagaaacagaaagaggaagtcttattaataatcatttactagtacaagtatttg |
407 |
Q |
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| T |
43556672 |
agatagggtgatataaatgcatgagaaacagaaagtggaagtcttattaataatcatttactagtactagtatttg |
43556597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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