View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1638_low_14 (Length: 245)
Name: NF1638_low_14
Description: NF1638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1638_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 25064183 - 25064425
Alignment:
| Q |
1 |
actatatcagcctacatcaaatcaatgttaggttttccnnnnnnnnttgtgagagtgatataagttttataatttctaatatttgcctatatatgtgatt |
100 |
Q |
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| T |
25064183 |
actatatcagcctacatcaaatcaatgttaggttttccaaaaaaaattgtgacagtgatataagttttataatttctaatatttgcctatatatgtgatt |
25064282 |
T |
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| Q |
101 |
atctaaactcttatttttcataggcaatatttaattataagtgaaaaatttataagtacaccttatattttgaaagactgaagagacttttgatattcta |
200 |
Q |
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| T |
25064283 |
atctaaactcttatttttcataggcaatatttaattataagtgaaaaatttataagtacaccttatattttgaaagaccgaagagacttttgatattcta |
25064382 |
T |
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| Q |
201 |
gaacatagattcgaactcgttttttctcatttggtctgtgatc |
243 |
Q |
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| T |
25064383 |
gaacatagattcgaactcgttttttttcatttggtgtgtgatc |
25064425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 94 - 243
Target Start/End: Original strand, 25085702 - 25085851
Alignment:
| Q |
94 |
tgtgattatctaaactcttatttttcataggcaatatttaattataagtgaaaaatttataagtacaccttatattttgaaagactgaagagacttttga |
193 |
Q |
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| T |
25085702 |
tgtgattatctaaaatcttatttttcataggcaatatttaattataagtgaaaaatttataagtacaccttatattttgaaagaccgaaaagacttttga |
25085801 |
T |
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| Q |
194 |
tattctagaacatagattcgaactcgttttttctcatttggtctgtgatc |
243 |
Q |
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| T |
25085802 |
tattctagaacatagattcgaactcgttttttcttatttggtgtgtgatc |
25085851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 25074029 - 25074103
Alignment:
| Q |
47 |
ttgtgagagtgatataagttttataatttctaatatttgcctatatatgtgattatctaaactcttatttttcat |
121 |
Q |
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| T |
25074029 |
ttgtgatagtgatataagttttaaaatttctaatatttgccaatatatgtgattatctaaaatcttatttttcat |
25074103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 149
Target Start/End: Original strand, 25091574 - 25091673
Alignment:
| Q |
47 |
ttgtgagagtgatataagttttataatttctaatatttgcctatatatgtgattatctaaactcttatttttcataggcaatatttaattataagtgaaa |
146 |
Q |
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| T |
25091574 |
ttgtgatagtgatataagttttaaaatgtctaatattttccaatatatgtgatcatctaaaatctcatttttcatagggaatatt---ttataagtgaaa |
25091670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 25085567 - 25085664
Alignment:
| Q |
1 |
actatatcagcctacatcaaatcaatgttaggttttccnnnnnnnnttgtgagagtgatataag-----ttttataatttctaatatttgcctatatat |
94 |
Q |
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| T |
25085567 |
actatatcagcctacattaaatcaatgttaggtcttcc-aaaaaatttgtgagagtgatataagtttaattttataatttctaataattgcatatatat |
25085664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 25091461 - 25091489
Alignment:
| Q |
1 |
actatatcagcctacatcaaatcaatgtt |
29 |
Q |
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| T |
25091461 |
actatatcagcctacatcaaatcaatgtt |
25091489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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