View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1638_low_2 (Length: 498)

Name: NF1638_low_2
Description: NF1638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1638_low_2
NF1638_low_2
[»] chr2 (1 HSPs)
chr2 (18-488)||(38891957-38892427)
[»] chr7 (2 HSPs)
chr7 (123-207)||(31795644-31795729)
chr7 (22-98)||(22189749-22189825)
[»] chr8 (1 HSPs)
chr8 (18-97)||(2615165-2615244)
[»] chr1 (3 HSPs)
chr1 (139-229)||(12380575-12380664)
chr1 (139-229)||(12384642-12384731)
chr1 (180-229)||(12363599-12363648)
[»] chr5 (1 HSPs)
chr5 (29-158)||(34981139-34981268)


Alignment Details
Target: chr2 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 18 - 488
Target Start/End: Original strand, 38891957 - 38892427
Alignment:
Q  18 tttacttgaagttaaaccactccatgaactttcacatgttgaaaattagtttgaaaacttatgatgcagcttccatgttgattgaaaattgttcaattgc 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38891957 tttacttgaagttaaaccactccatgaactttcacatgtcgaaaattagtttgaaaacttatggtgcagcttccatgttgattgaaaattgttcaattgc 38892056  T
Q  118 cgaagtaatctcacacacactttgcatcaatttcaatcaatgtccatgtactaagaaacaccttgtgtaatattgattgtatcaacacattgttaacttg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38892057 cgaagtaatctcacacacactttgcatcaatttcaatcaatgtccatgtactaagaaacaccttgtgtaatattgattgtatcaacacattgttaacttg 38892156  T
Q  218 aattttccacaagccaaaaaatgattcttccatcaattctctctcgtccaaacttcacaacgaaacttgtgattgtaattgtatccataccacaactatg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38892157 aattttccacaagccaaaaaatgattcttccatcaattctctctcgtccaaacttcacaacggaacttgtgattgtaattgtatccataccacaactatg 38892256  T
Q  318 cactagagaagttcccaataaagagaggtcaagtcacaatggacttgtctaagtaccaagtctttccaagctagaaccttccaaaacaacacttccaaac 417  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38892257 cactagagaagttcctaataaagagaggtcaagtcacaatggactcgtctaagtaccaagtctttcctagctagaaccttccaaaacaacacttccaaac 38892356  T
Q  418 caaaagctcttatattagttgttgggtggtctgaaggagcactgaaagcaacaacaaaccaattacctatg 488  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||    
T  38892357 caaaagctcttatattagttgttgggtggtctgaaggagcacggaaagcaacagcgaaccaattacctatg 38892427  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 31795644 - 31795729
Alignment:
Q  123 taatctcaca-cacactttgcatcaatttcaatcaatgtccatgtactaagaaacaccttgtgtaatattgattgtatcaacacat 207  Q
    |||||||||| ||||||||| |||||| |||| |||||  | ||||||||  ||||||||||||||| ||||||||||||||||||    
T  31795644 taatctcacaacacactttgtatcaatgtcaaccaatgcgcgtgtactaatcaacaccttgtgtaatcttgattgtatcaacacat 31795729  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 22189749 - 22189825
Alignment:
Q  22 cttgaagttaaaccactccatgaactttcacatgttgaaaattagtttgaaaacttatgatgcagcttccatgttga 98  Q
    |||| |||||||||||| || ||| |||||||| | |||||| || ||||||||||| |  ||| ||||||||||||    
T  22189749 cttgtagttaaaccacttcaagaattttcacatatcgaaaatgaggttgaaaacttaaggagcaacttccatgttga 22189825  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 2615165 - 2615244
Alignment:
Q  18 tttacttgaagttaaaccactccatgaactttcacatgttgaaaattagtttgaaaacttatgatgcagcttccatgttg 97  Q
    |||||||||||||||| ||||||| ||| ||| |||||||||||||  |  ||||||||||| ||||| ||| |||||||    
T  2615165 tttacttgaagttaaaacactccaagaatttttacatgttgaaaatccggctgaaaacttataatgcaactttcatgttg 2615244  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 12380664 - 12380575
Alignment:
Q  139 ttgcatcaatttcaatcaatgtccatgtactaagaaacaccttgtgtaatattgattgtatcaacacattgttaacttgaattttccacaa 229  Q
    |||||||||| ||||||||||  ||| ||||||  || |  ||||||||| |||| |||||||||||||| || ||||||||||| |||||    
T  12380664 ttgcatcaatgtcaatcaatgctcatatactaatcaatat-ttgtgtaatcttgaatgtatcaacacattttttacttgaatttttcacaa 12380575  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 12384731 - 12384642
Alignment:
Q  139 ttgcatcaatttcaatcaatgtccatgtactaagaaacaccttgtgtaatattgattgtatcaacacattgttaacttgaattttccacaa 229  Q
    |||||||||| ||||||||||  ||| ||||||  || |  ||||||||| |||| |||||||||||||| || ||||||||||| |||||    
T  12384731 ttgcatcaatgtcaatcaatgctcatatactaatcaatat-ttgtgtaatcttgaatgtatcaacacattttttacttgaatttttcacaa 12384642  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 12363648 - 12363599
Alignment:
Q  180 ttgtgtaatattgattgtatcaacacattgttaacttgaattttccacaa 229  Q
    ||||||||| |||| |||||||||||||| || ||||||||||| |||||    
T  12363648 ttgtgtaatcttgaatgtatcaacacattttttacttgaatttttcacaa 12363599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 34981139 - 34981268
Alignment:
Q  29 ttaaaccactccatgaactttcacatgttgaaaattagtttgaaaacttatgatgcagcttccatgttgattgaaaattgttcaattgccgaagtaatct 128  Q
    |||||||||||||  || ||||||||||  ||||| |   | |||||||||  |||| ||||||| ||| ||||||| | |||||   | ||  ||||||    
T  34981139 ttaaaccactccaataattttcacatgtcaaaaatcatgctaaaaacttatcgtgcaacttccatattggttgaaaactcttcaaccactgacataatct 34981238  T
Q  129 cacacacactttgcatcaatttcaatcaat 158  Q
    || ||||||||||||||||| |||||||||    
T  34981239 caaacacactttgcatcaatgtcaatcaat 34981268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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