View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1638_low_4 (Length: 420)

Name: NF1638_low_4
Description: NF1638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1638_low_4
NF1638_low_4
[»] chr3 (39 HSPs)
chr3 (116-261)||(54560031-54560175)
chr3 (118-261)||(50838253-50838394)
chr3 (117-260)||(54560812-54560953)
chr3 (118-260)||(1576486-1576626)
chr3 (118-260)||(1577506-1577645)
chr3 (118-260)||(50837460-50837599)
chr3 (119-261)||(43546367-43546507)
chr3 (117-261)||(47471470-47471612)
chr3 (118-261)||(35942098-35942241)
chr3 (140-246)||(50382749-50382853)
chr3 (118-246)||(31800374-31800499)
chr3 (143-254)||(35942778-35942887)
chr3 (142-254)||(50381877-50381986)
chr3 (190-261)||(47470765-47470835)
chr3 (134-233)||(52946382-52946480)
chr3 (115-259)||(28539353-28539493)
chr3 (117-233)||(11032386-11032501)
chr3 (134-233)||(52947788-52947885)
chr3 (344-396)||(54560259-54560311)
chr3 (116-254)||(31799468-31799603)
chr3 (134-233)||(49725987-49726085)
chr3 (134-233)||(52118264-52118362)
chr3 (117-233)||(1137609-1137724)
chr3 (134-229)||(1136256-1136350)
chr3 (113-173)||(47470717-47470778)
chr3 (136-231)||(51149983-51150077)
chr3 (134-233)||(11033763-11033861)
chr3 (134-169)||(52116926-52116961)
chr3 (108-173)||(36026959-36027024)
chr3 (137-233)||(40954663-40954759)
chr3 (159-231)||(42078655-42078728)
chr3 (141-216)||(33831660-33831734)
chr3 (138-233)||(34651382-34651476)
chr3 (134-173)||(49724642-49724681)
chr3 (136-178)||(49964696-49964738)
chr3 (112-161)||(31585335-31585384)
chr3 (117-178)||(34649874-34649935)
chr3 (359-396)||(47470944-47470981)
chr3 (356-396)||(50838099-50838139)
[»] chr6 (21 HSPs)
chr6 (117-261)||(15347431-15347574)
chr6 (117-261)||(17732810-17732952)
chr6 (113-261)||(30709486-30709630)
chr6 (107-260)||(17732004-17732155)
chr6 (118-261)||(30710273-30710413)
chr6 (122-261)||(6009422-6009559)
chr6 (117-254)||(15348198-15348332)
chr6 (118-260)||(6008641-6008781)
chr6 (134-233)||(10917875-10917973)
chr6 (136-233)||(4137673-4137769)
chr6 (134-233)||(4138916-4139013)
chr6 (134-229)||(1387596-1387690)
chr6 (137-233)||(10919272-10919367)
chr6 (349-396)||(15347663-15347710)
chr6 (140-233)||(1378477-1378568)
chr6 (140-233)||(1386225-1386316)
chr6 (356-396)||(6009273-6009313)
chr6 (143-254)||(1792644-1792753)
chr6 (359-396)||(30709739-30709776)
chr6 (17-97)||(7984625-7984705)
chr6 (356-396)||(17732658-17732698)
[»] chr5 (37 HSPs)
chr5 (117-261)||(5347722-5347865)
chr5 (115-260)||(5348501-5348644)
chr5 (118-261)||(36429282-36429423)
chr5 (108-261)||(36681845-36681994)
chr5 (110-260)||(31808269-31808417)
chr5 (118-261)||(7491248-7491392)
chr5 (143-254)||(10326845-10326955)
chr5 (118-253)||(33136590-33136723)
chr5 (116-233)||(19897390-19897506)
chr5 (138-261)||(29500028-29500150)
chr5 (344-396)||(5347949-5348001)
chr5 (190-261)||(36430060-36430130)
chr5 (134-233)||(43492769-43492867)
chr5 (136-233)||(34088593-34088688)
chr5 (116-233)||(17640351-17640467)
chr5 (136-233)||(26626570-26626667)
chr5 (118-173)||(36430117-36430172)
chr5 (134-233)||(38559587-38559685)
chr5 (136-231)||(38561144-38561238)
chr5 (117-261)||(7493203-7493347)
chr5 (134-178)||(17641770-17641814)
chr5 (109-233)||(23094739-23094862)
chr5 (141-260)||(29500700-29500817)
chr5 (117-261)||(36681037-36681175)
chr5 (137-229)||(34384993-34385085)
chr5 (134-173)||(23093255-23093294)
chr5 (115-225)||(5874256-5874365)
chr5 (134-178)||(19898860-19898904)
chr5 (136-233)||(1301245-1301339)
chr5 (140-231)||(1302791-1302881)
chr5 (176-249)||(21012417-21012487)
chr5 (136-178)||(26625059-26625101)
chr5 (138-168)||(43492563-43492593)
chr5 (140-196)||(971298-971352)
chr5 (17-94)||(2054077-2054154)
chr5 (136-233)||(34089951-34090047)
chr5 (41-97)||(564904-564960)
[»] chr2 (18 HSPs)
chr2 (118-261)||(4592627-4592769)
chr2 (116-260)||(10256485-10256627)
chr2 (117-260)||(4593399-4593540)
chr2 (138-254)||(22539115-22539226)
chr2 (140-233)||(45114914-45115006)
chr2 (117-233)||(39619273-39619389)
chr2 (344-396)||(4592853-4592905)
chr2 (190-261)||(10255740-10255810)
chr2 (142-233)||(33003741-33003831)
chr2 (134-229)||(36657634-36657728)
chr2 (142-254)||(33002900-33003009)
chr2 (137-233)||(10865201-10865296)
chr2 (134-233)||(39618044-39618141)
chr2 (136-233)||(36764770-36764867)
chr2 (115-169)||(10255694-10255749)
chr2 (117-207)||(28780080-28780169)
chr2 (142-231)||(45227240-45227327)
chr2 (359-396)||(10255919-10255956)
[»] chr8 (26 HSPs)
chr8 (118-261)||(14790672-14790814)
chr8 (116-260)||(14791449-14791591)
chr8 (118-261)||(20112271-20112411)
chr8 (17-117)||(33012667-33012767)
chr8 (115-231)||(14864969-14865084)
chr8 (117-254)||(20111491-20111625)
chr8 (136-233)||(32672308-32672404)
chr8 (137-233)||(767605-767700)
chr8 (344-396)||(14790899-14790951)
chr8 (117-233)||(35124626-35124741)
chr8 (116-233)||(11681568-11681684)
chr8 (134-233)||(11680186-11680284)
chr8 (140-231)||(21190065-21190155)
chr8 (136-233)||(35123254-35123350)
chr8 (134-231)||(14866109-14866206)
chr8 (134-231)||(27242993-27243089)
chr8 (134-231)||(27254568-27254664)
chr8 (134-239)||(32673670-32673774)
chr8 (134-231)||(32219554-32219650)
chr8 (200-244)||(45105524-45105567)
chr8 (41-96)||(44395728-44395783)
chr8 (136-178)||(27241619-27241661)
chr8 (136-178)||(27247492-27247534)
chr8 (136-233)||(12128081-12128177)
chr8 (359-396)||(20112123-20112160)
chr8 (175-254)||(26544581-26544659)
[»] chr4 (39 HSPs)
chr4 (113-260)||(621531-621676)
chr4 (118-261)||(27454917-27455057)
chr4 (118-260)||(620470-620610)
chr4 (115-261)||(21225796-21225938)
chr4 (117-231)||(49682055-49682167)
chr4 (118-260)||(49681264-49681402)
chr4 (108-233)||(56063637-56063762)
chr4 (139-254)||(31633614-31633726)
chr4 (116-233)||(16508143-16508259)
chr4 (116-254)||(21226525-21226659)
chr4 (112-233)||(50664422-50664542)
chr4 (135-231)||(23102304-23102399)
chr4 (134-233)||(2613647-2613745)
chr4 (134-233)||(50663011-50663109)
chr4 (170-254)||(11147797-11147879)
chr4 (117-233)||(16506868-16506983)
chr4 (115-254)||(31632379-31632514)
chr4 (115-261)||(21224243-21224385)
chr4 (134-233)||(55978491-55978589)
chr4 (115-173)||(27455765-27455823)
chr4 (136-233)||(56065151-56065247)
chr4 (117-233)||(23100937-23101052)
chr4 (190-261)||(27455708-27455778)
chr4 (115-233)||(2217152-2217269)
chr4 (116-253)||(31779860-31779996)
chr4 (134-235)||(677062-677162)
chr4 (137-233)||(52897714-52897809)
chr4 (169-254)||(11148098-11148180)
chr4 (136-173)||(3880872-3880909)
chr4 (118-233)||(31779729-31779846)
chr4 (117-233)||(2215784-2215899)
chr4 (356-396)||(49681878-49681918)
chr4 (134-233)||(2615022-2615120)
chr4 (141-233)||(52896329-52896420)
chr4 (117-163)||(5865447-5865492)
chr4 (123-173)||(6194940-6194990)
chr4 (359-396)||(27455168-27455205)
chr4 (117-161)||(30317557-30317601)
chr4 (40-96)||(37624906-37624962)
[»] scaffold0102 (3 HSPs)
scaffold0102 (117-261)||(32350-32493)
scaffold0102 (118-261)||(33138-33280)
scaffold0102 (359-396)||(32602-32639)
[»] chr1 (28 HSPs)
chr1 (113-261)||(47445769-47445917)
chr1 (118-254)||(47444988-47445122)
chr1 (118-260)||(36475966-36476106)
chr1 (139-260)||(27585312-27585429)
chr1 (115-259)||(36475268-36475411)
chr1 (117-254)||(27585987-27586120)
chr1 (117-233)||(11343355-11343470)
chr1 (117-233)||(11501375-11501490)
chr1 (141-254)||(45575952-45576061)
chr1 (117-226)||(786734-786843)
chr1 (117-233)||(14282779-14282894)
chr1 (117-233)||(14284194-14284309)
chr1 (136-233)||(4564152-4564248)
chr1 (136-233)||(41707005-41707101)
chr1 (134-233)||(11341985-11342083)
chr1 (134-233)||(11500004-11500102)
chr1 (134-233)||(42813796-42813894)
chr1 (136-178)||(38482521-38482563)
chr1 (108-233)||(41729856-41729980)
chr1 (137-233)||(42813248-42813343)
chr1 (136-233)||(16420135-16420231)
chr1 (102-170)||(16422126-16422194)
chr1 (356-396)||(47445620-47445660)
chr1 (173-227)||(45577292-45577346)
chr1 (134-228)||(46318776-46318869)
chr1 (118-207)||(52360337-52360426)
chr1 (176-228)||(24646463-24646514)
chr1 (191-235)||(46319143-46319187)
[»] chr7 (20 HSPs)
chr7 (118-253)||(3987239-3987371)
chr7 (117-261)||(36067295-36067435)
chr7 (140-249)||(36068113-36068220)
chr7 (115-254)||(32390892-32391027)
chr7 (117-254)||(6733140-6733273)
chr7 (141-261)||(30480689-30480808)
chr7 (118-245)||(6733017-6733141)
chr7 (118-253)||(24240566-24240699)
chr7 (135-233)||(31285487-31285584)
chr7 (134-233)||(31286866-31286964)
chr7 (112-233)||(35394712-35394832)
chr7 (118-254)||(41589186-41589315)
chr7 (117-233)||(29721083-29721195)
chr7 (134-231)||(34894211-34894307)
chr7 (158-260)||(3986569-3986667)
chr7 (134-233)||(35393179-35393277)
chr7 (135-207)||(26157289-26157360)
chr7 (117-173)||(29417150-29417206)
chr7 (118-173)||(21125695-21125750)
chr7 (356-393)||(36067544-36067581)
[»] scaffold0020 (1 HSPs)
scaffold0020 (167-253)||(1997-2080)
[»] scaffold0169 (2 HSPs)
scaffold0169 (118-254)||(26683-26817)
scaffold0169 (176-254)||(27404-27477)
[»] scaffold0096 (1 HSPs)
scaffold0096 (118-173)||(35077-35132)
[»] scaffold0006 (1 HSPs)
scaffold0006 (118-173)||(43446-43501)
[»] scaffold0380 (1 HSPs)
scaffold0380 (122-159)||(7662-7698)
[»] scaffold0008 (1 HSPs)
scaffold0008 (113-173)||(239157-239217)


Alignment Details
Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 116 - 261
Target Start/End: Original strand, 54560031 - 54560175
Alignment:
Q  116 ttgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  54560031 ttgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttc-aaaaacccccatgaaattatcaaacg 54560129  T
Q  216 ttagtcaattaccccccttccgtttgttttggctgttaagtgacta 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  54560130 ttagtcaattaccccccttccgtttgttttggctgttaagtgacta 54560175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 118 - 261
Target Start/End: Complemental strand, 50838394 - 50838253
Alignment:
Q  118 gagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgtt 217  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||    
T  50838394 gagtgaataggcaaaaatccccctgaaattgtaactttcgtcaaaaacccccctaatttttaagaaacttca-aaaactcccctgaaattatcaaacgtt 50838296  T
Q  218 agtcaattaccccccttccgtttgttttggctgttaagtgacta 261  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||    
T  50838295 agtcaattacccccc-tccgtttgttttggctgttaaatgacta 50838253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 117 - 260
Target Start/End: Complemental strand, 54560953 - 54560812
Alignment:
Q  117 tgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgt 216  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||  |||||||    
T  54560953 tgagtaaataggcaaaaacccccctgaaattgtagctttcgtcaaaaacccccctgatttttaggaaacttcaaaaaac-cccctgaaattgacaaacgt 54560855  T
Q  217 tagtcaattaccccccttccgtttgttttggctgttaagtgact 260  Q
    |||||||||||||||| ||||||||||||||||||||| |||||    
T  54560854 tagtcaattacccccc-tccgtttgttttggctgttaaatgact 54560812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 118 - 260
Target Start/End: Original strand, 1576486 - 1576626
Alignment:
Q  118 gagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgtt 217  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||  ||||||||    
T  1576486 gagtaaataggcaaaaacccccctgaaattgtagctttcgtcaaaaacccccctgatttttaggaaacttc-aaaaacccccctgaaattgacaaacgtt 1576584  T
Q  218 agtcaattaccccccttccgtttgttttggctgttaagtgact 260  Q
    ||||||||||||||| |||||||||||||||| |||| |||||    
T  1576585 agtcaattacccccc-tccgtttgttttggctattaaatgact 1576626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 118 - 260
Target Start/End: Complemental strand, 1577645 - 1577506
Alignment:
Q  118 gagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgtt 217  Q
    |||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||  ||||||||||||  ||||||||    
T  1577645 gagtaaatagtcaaaaacccccctgaaattgtagctttcgtcaaaaacccccctgatttttaggaaacttcaaaaa--ccccctgaaattgacaaacgtt 1577548  T
Q  218 agtcaattaccccccttccgtttgttttggctgttaagtgact 260  Q
    ||||||||||||||| ||||||||||||||||||||| |||||    
T  1577547 agtcaattacccccc-tccgtttgttttggctgttaaatgact 1577506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 118 - 260
Target Start/End: Original strand, 50837460 - 50837599
Alignment:
Q  118 gagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgtt 217  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||  ||||||||||||  ||||||||    
T  50837460 gagtgaataggcaaaaatccccctgaaattgtaactttcgtcaaaaacccccctgatttttagaaaatttcaaaaa--ccccctgaaattgacaaacgtt 50837557  T
Q  218 agtcaattaccccccttccgtttgttttggctgttaagtgact 260  Q
    ||||||||||||||| ||||||||||||||||||||| |||||    
T  50837558 agtcaattacccccc-tccgtttgttttggctgttaaatgact 50837599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 119 - 261
Target Start/End: Original strand, 43546367 - 43546507
Alignment:
Q  119 agtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgtta 218  Q
    ||||||||||||||||| || ||||||||||||||||||||||||| |  |||||||||||||||||||| ||||||||| ||||||||||||||||| |    
T  43546367 agtgaataggcaaaaactcctctgaaattgtaactttcgtcaaaaatcttcctgatttttaagaaacttc-aaaaacccctctgaaattatcaaacgtca 43546465  T
Q  219 gtcaattaccccccttccgtttgttttggctgttaagtgacta 261  Q
    |||||||||||||| ||||||||||||||||||||| ||||||    
T  43546466 gtcaattacccccc-tccgtttgttttggctgttaaatgacta 43546507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 117 - 261
Target Start/End: Complemental strand, 47471612 - 47471470
Alignment:
Q  117 tgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgt 216  Q
    ||||| |||||||||||| |||| |||||||||| |||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||  |||||||    
T  47471612 tgagtaaataggcaaaaaaccccttgaaattgtagctttcgtcaaaaccccccctgatttttaggaaacttca-aaaacccccctgaaattgccaaacgt 47471514  T
Q  217 tagtcaattaccccccttccgtttgttttggctgttaagtgacta 261  Q
    |||||||||||||||| || |||||||||||||||||| ||||||    
T  47471513 tagtcaattacccccc-tctgtttgttttggctgttaaatgacta 47471470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 118 - 261
Target Start/End: Original strand, 35942098 - 35942241
Alignment:
Q  118 gagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgtt 217  Q
    ||||||||||||||||  |||||| ||||||||||||||||||||||| | |||||||||||||||||||   ||||| ||||||||||| |||||||||    
T  35942098 gagtgaataggcaaaactccccctaaaattgtaactttcgtcaaaaactctcctgatttttaagaaactt--taaaactcccctgaaattgtcaaacgtt 35942195  T
Q  218 agtcaattacccc--ccttccgtttgttttggctgttaagtgacta 261  Q
    |||||| ||||||  || ||| ||||||||||||||||| ||||||    
T  35942196 agtcaactaccccctccctccatttgttttggctgttaaatgacta 35942241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 140 - 246
Target Start/End: Complemental strand, 50382853 - 50382749
Alignment:
Q  140 ctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccccccttccgtt 239  Q
    ||||||| |||||||||||||||||| ||||||| |||||||||||||| ||| |||||| ||||||  |||||||||||||||||||||||||| ||||    
T  50382853 ctgaaatcgtaactttcgtcaaaaactcccctgacttttaagaaacttc-aaacacccccatgaaatggtcaaacgttagtcaattacccccctt-cgtt 50382756  T
Q  240 tgttttg 246  Q
    |||||||    
T  50382755 tgttttg 50382749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 118 - 246
Target Start/End: Complemental strand, 31800499 - 31800374
Alignment:
Q  118 gagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgtt 217  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||  ||| ||||||||||||||||||  ||||| ||  | ||||| | |||||||    
T  31800499 gagtgaataggcaaaaactcccccgaaattgtaactttcgtcaaaaaatcccatgatttttaagaaacttc-taaaactcctataaaattgtgaaacgtt 31800401  T
Q  218 agtcaattaccccccttccgtttgttttg 246  Q
    ||||| ||||||||  |||||||||||||    
T  31800400 agtcagttaccccc--tccgtttgttttg 31800374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 143 - 254
Target Start/End: Complemental strand, 35942887 - 35942778
Alignment:
Q  143 aaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccccccttccgtttgt 242  Q
    ||||||||| |||||||||||| |||| ||| ||||| |||||||||||||| |||| ||||||| | |||||||||||||||||||||| ||| |||||    
T  35942887 aaattgtaattttcgtcaaaaatcccc-tgacttttatgaaacttcaaaaaaaccccttgaaattgttaaacgttagtcaattacccccc-tccatttgt 35942790  T
Q  243 tttggctgttaa 254  Q
    ||||| ||||||    
T  35942789 tttggttgttaa 35942778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 142 - 254
Target Start/End: Original strand, 50381877 - 50381986
Alignment:
Q  142 gaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccccccttccgtttg 241  Q
    ||||||||| | || |||||||||||| ||||  ||||||||||||||||   |||| |||||||| |||||||||||||||||||||||| || |||||    
T  50381877 gaaattgtagcatttgtcaaaaacccctctgacatttaagaaacttcaaat--cccctctgaaattgtcaaacgttagtcaattacccccc-tctgtttg 50381973  T
Q  242 ttttggctgttaa 254  Q
    |||||||||||||    
T  50381974 ttttggctgttaa 50381986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 190 - 261
Target Start/End: Original strand, 47470765 - 47470835
Alignment:
Q  190 aaaaacccccctgaaattatcaaacgttagtcaattaccccccttccgtttgttttggctgttaagtgacta 261  Q
    ||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||    
T  47470765 aaaaatccccctgaaattatcaaacgtcagtcaattacccccc-tccgtttgttttggctgttaaatgacta 47470835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 52946382 - 52946480
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    |||||||||||||||||||||||||||||||||||||||| ||||   |||  || |||||||||||||||||| |||| |||  |||||||||||||||    
T  52946382 acccccctgaaattgtaactttcgtcaaaaacccccctgaattttgcaaaatgtc-aaaaacccccctgaaattgtcaagcgtctgtcaattacccccct 52946480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 115 - 259
Target Start/End: Complemental strand, 28539493 - 28539353
Alignment:
Q  115 tttgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaac 214  Q
    ||||||| |||||||||||||| || | |||| || |||||  | ||||| || ||||||||||||||||||||  ||||||||| | ||||| | ||||    
T  28539493 tttgagtcaataggcaaaaaccaccataaaatcgtgacttttataaaaaatcctcctgatttttaagaaacttc--aaaacccccataaaattgttaaac 28539396  T
Q  215 gttagtcaattaccccccttccgtttgttttggctgttaagtgac 259  Q
    |||||||||||| || |  ||||||||||||||||||||| ||||    
T  28539395 gttagtcaattatcctc--tccgtttgttttggctgttaaatgac 28539353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 117 - 233
Target Start/End: Original strand, 11032386 - 11032501
Alignment:
Q  117 tgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgt 216  Q
    ||||| ||||| |||  |||||||||||||| ||||||||||||||||||||||||| ||||   |||  || |||||||||||||||||| |||| |||    
T  11032386 tgagtaaatagtcaattacccccctgaaattttaactttcgtcaaaaacccccctgaattttgtaaaatgtc-aaaaacccccctgaaattgtcaagcgt 11032484  T
Q  217 tagtcaattacccccct 233  Q
      |||||||||||||||    
T  11032485 ctgtcaattacccccct 11032501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 52947885 - 52947788
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||  |||  |||||||  |||||||||||| |||| |||  |||||||||||||||    
T  52947885 acccccctgaaattgtaactttcgtcaaaaacccctctgaattttacaaaatgtcaaaaa--ccccctgaaattgtcaagcgtctgtcaattacccccct 52947788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 54560259 - 54560311
Alignment:
Q  344 aaaaatttaagaaacaacaacatcatgatcaacatcacacactttctaatgat 396  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  54560259 aaaaatttaagaaacaacaacatcatcatcaacatcacacactttctaatgat 54560311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 116 - 254
Target Start/End: Original strand, 31799468 - 31799603
Alignment:
Q  116 ttgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacg 215  Q
    ||||||||||||||||| || | | ||||||| |||||||||||||||| | |||||| ||||||||||||| | || |     |||||||| ||||| |    
T  31799468 ttgagtgaataggcaaagacactcatgaaattataactttcgtcaaaaaactccctgacttttaagaaactt-agaagaaaaaactgaaattgtcaaatg 31799566  T
Q  216 ttagtcaattaccccccttccgtttgttttggctgttaa 254  Q
    ||||||||||||||||  ||||||||||||| |||||||    
T  31799567 ttagtcaattaccccc--tccgtttgttttgactgttaa 31799603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 49726085 - 49725987
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    |||||||||||||||||||||||||||||||||||||||| ||||   |||  || ||||| |||||||||||| |||| |||  |||||||||||||||    
T  49726085 acccccctgaaattgtaactttcgtcaaaaacccccctgaattttgtaaaatgtc-aaaaatccccctgaaattgtcaagcgtctgtcaattacccccct 49725987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 52118362 - 52118264
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||   |||  || |||||||||||||||||| |||| |||  |||||||||||||||    
T  52118362 acccccctgaaattgtaactttcgtcaaaaacccccatgaattttgcaaaatgtc-aaaaacccccctgaaattgtcaagcgtctgtcaattacccccct 52118264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 117 - 233
Target Start/End: Complemental strand, 1137724 - 1137609
Alignment:
Q  117 tgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgt 216  Q
    ||||| ||||| |||  |||||| ||||||||||||||||||||||||||||||||| ||||   |||  || |||| ||||||||||||| |||| |||    
T  1137724 tgagtaaatagtcaattacccccttgaaattgtaactttcgtcaaaaacccccctgaattttgcaaaatgtc-aaaaccccccctgaaattgtcaagcgt 1137626  T
Q  217 tagtcaattacccccct 233  Q
      |||||||||||||||    
T  1137625 ctgtcaattacccccct 1137609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 134 - 229
Target Start/End: Original strand, 1136256 - 1136350
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccc 229  Q
    |||||||||||||||||||||||||||||||||||||||| ||||   |||  || |||||||||||||||||| |||  |||  |||||||||||    
T  1136256 acccccctgaaattgtaactttcgtcaaaaacccccctgaattttgcaaaatgtc-aaaaacccccctgaaattgtcacgcgtctgtcaattaccc 1136350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 47470717 - 47470778
Alignment:
Q  113 tttttgagtgaataggcaaaaa-cccccctgaaattgtaactttcgtcaaaaacccccctga 173  Q
    |||| |||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||    
T  47470717 ttttggagtgaatgggcaaaaatcccccctgaaattgtaactttcgtcaaaaatccccctga 47470778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 231
Target Start/End: Original strand, 51149983 - 51150077
Alignment:
Q  136 ccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccccc 231  Q
    ||||||||||||||||||||||||||||||||| |||| ||||   |||  || ||||||||| |||||||| |||| |||  |||||||||||||    
T  51149983 ccccctgaaattgtaactttcgtcaaaaacccctctgaattttgcaaaatgtc-aaaaacccctctgaaattgtcaagcgtctgtcaattaccccc 51150077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 11033861 - 11033763
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    |||||| ||||||||||||||||||||||||  ||||||| ||||   |||  ||||||||  ||||||||||| |||| |||  |||||||||||||||    
T  11033861 acccccttgaaattgtaactttcgtcaaaaaatcccctgaattttgtaaaatgtcaaaaaa-acccctgaaattgtcaagcgtctgtcaattacccccct 11033763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 169
Target Start/End: Original strand, 52116926 - 52116961
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaaccccc 169  Q
    ||||||||||||||||||||||||||||||||||||    
T  52116926 acccccctgaaattgtaactttcgtcaaaaaccccc 52116961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 36026959 - 36027024
Alignment:
Q  108 atttatttttgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctga 173  Q
    ||||| || ||||| |||||||||  |||||||||||||||||| |||||||||  ||||||||||    
T  36026959 atttaattatgagtaaataggcaattacccccctgaaattgtaagtttcgtcaattacccccctga 36027024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 233
Target Start/End: Original strand, 40954663 - 40954759
Alignment:
Q  137 cccctgaaattgtaactttcgtc-aaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    ||||||||||||||||||| ||| ||||| |||||||| ||||   |||  || |||||||||||||||||| |||| |||  |||||||||||||||    
T  40954663 cccctgaaattgtaacttttgtcaaaaaaaccccctgaattttgcaaaatgtc-aaaaacccccctgaaattgtcaagcgtctgtcaattacccccct 40954759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 42078728 - 42078655
Alignment:
Q  159 caaaaacccccctgatttttaagaaacttcaaaaaacccc-cctgaaattatcaaacgttagtcaattaccccc 231  Q
    |||||||| |||| ||||||||||||||||||||||     ||| ||||| |||||||||||||||||||||||    
T  42078728 caaaaaccaccctaatttttaagaaacttcaaaaaaaaaatcctaaaattgtcaaacgttagtcaattaccccc 42078655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 33831660 - 33831734
Alignment:
Q  141 tgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgt 216  Q
    ||||||| ||||||||||||||||| ||  ||| |||||||| ||||| |||||||| | ||||||| ||||||||    
T  33831660 tgaaattataactttcgtcaaaaactcctttgacttttaagacacttc-aaaaaccctcgtgaaattgtcaaacgt 33831734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 34651476 - 34651382
Alignment:
Q  138 ccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    ||||||||||||||||||  |||||||||||||||| ||||   |||  || |||||||||||||||||| ||||   |  |||||||||||||||    
T  34651476 ccctgaaattgtaacttttatcaaaaacccccctgaattttgcaaaatgtc-aaaaacccccctgaaattgtcaagtttctgtcaattacccccct 34651382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 173
Target Start/End: Original strand, 49724642 - 49724681
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctga 173  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  49724642 acccccctgaaattgtaattttcgtcaaaaaccccactga 49724681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 178
Target Start/End: Original strand, 49964696 - 49964738
Alignment:
Q  136 ccccctgaaattgtaactttcgtcaaaaacccccctgattttt 178  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||    
T  49964696 ccccctgaaattgtaactttcgttaaaaaaccccctgaatttt 49964738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 31585384 - 31585335
Alignment:
Q  112 atttttgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaa 161  Q
    |||||||||| |||||||||  |||||| ||||||||||| |||||||||    
T  31585384 atttttgagtaaataggcaattacccccttgaaattgtaagtttcgtcaa 31585335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 34649874 - 34649935
Alignment:
Q  117 tgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgattttt 178  Q
    ||||| ||||| |||  |||||| |||||||||||||||||| |||||| ||||||| ||||    
T  34649874 tgagtaaatagtcaattacccccttgaaattgtaactttcgtaaaaaactcccctgaatttt 34649935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 396
Target Start/End: Original strand, 47470944 - 47470981
Alignment:
Q  359 aacaacatcatgatcaacatcacacactttctaatgat 396  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  47470944 aacaacatcatcatcaacatcacacactttataatgat 47470981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 396
Target Start/End: Complemental strand, 50838139 - 50838099
Alignment:
Q  356 aacaacaacatcatgatcaacatcacacactttctaatgat 396  Q
    ||||||| |||||| |||||| |||||||||||||||||||    
T  50838139 aacaacatcatcatcatcaacctcacacactttctaatgat 50838099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 133; Significance: 5e-69; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 117 - 261
Target Start/End: Original strand, 15347431 - 15347574
Alignment:
Q  117 tgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgt 216  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  15347431 tgagtaaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttc-aaaaacccccctgaaattatcaaacgt 15347529  T
Q  217 tagtcaattaccccccttccgtttgttttggctgttaagtgacta 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  15347530 tagtcaattaccccccttccgtttgttttggctgttaagtgacta 15347574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 117 - 261
Target Start/End: Complemental strand, 17732952 - 17732810
Alignment:
Q  117 tgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgt 216  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17732952 tgagtgaataggcaaaaccccccttgaaattgtaactttcgtcaaaaaaccccctgatttttaagaaacttca-aaaacccccctgaaattatcaaacgt 17732854  T
Q  217 tagtcaattaccccccttccgtttgttttggctgttaagtgacta 261  Q
    ||| |||||||||||| ||||||||||||||||||||| ||||||    
T  17732853 tagccaattacccccc-tccgtttgttttggctgttaaatgacta 17732810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 113 - 261
Target Start/End: Original strand, 30709486 - 30709630
Alignment:
Q  113 tttttgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaa 212  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| || |||||||||||||    
T  30709486 tttttgagtgaataggcaaaaacccctctgaaattgtaactttcgtcaaaaatccccctgatttttaagaaacttc-aaaaacgcctctgaaattatcaa 30709584  T
Q  213 acgttagtcaattaccccccttccgtttgttttggctgttaagtgacta 261  Q
    |||| |||| |||||||||  ||||||||||||||||||||| ||||||    
T  30709585 acgtcagtc-attaccccc--tccgtttgttttggctgttaaatgacta 30709630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 107 - 260
Target Start/End: Original strand, 17732004 - 17732155
Alignment:
Q  107 aatttatttttgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaat 206  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||  ||| ||||||||| |||||||||||    
T  17732004 aatttatttatgagtaaataggcaaaaacccccctgaaattgtagttttcgtcaaaaatccccctgatttttagaaaatttcaaaaaa-ccccctgaaat 17732102  T
Q  207 tatcaaacgttagtcaattaccccccttccgtttgttttggctgttaagtgact 260  Q
    |  ||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  17732103 tgacaaacgttagtcaattacccccc-tccgtttgttttggctgttaaatgact 17732155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 118 - 261
Target Start/End: Complemental strand, 30710413 - 30710273
Alignment:
Q  118 gagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgtt 217  Q
    |||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||  ||||||||||||  ||||||||    
T  30710413 gagtaaataggcaaaaacccccttgaaattgtagctttcgtcaaaaacccccctgatttttaggaaacttcaaaaa--ccccctgaaattgccaaacgtt 30710316  T
Q  218 agtcaattaccccccttccgtttgttttggctgttaagtgacta 261  Q
    ||||||||| ||||| || |||||||||||||||||| ||||||    
T  30710315 agtcaatta-cccccatctgtttgttttggctgttaaatgacta 30710273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 122 - 261
Target Start/End: Complemental strand, 6009559 - 6009422
Alignment:
Q  122 gaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtc 221  Q
    |||||||||||||||||| ||||||| |||||||||||||||||   ||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  6009559 gaataggcaaaaacccccttgaaattataactttcgtcaaaaactttcctgatttttaagaaacttca-aaaactcccctgaaattatcaaacgttagtc 6009461  T
Q  222 aattaccccccttccgtttgttttggctgttaagtgacta 261  Q
    ||||| ||| | ||||||||||||||||||||| ||||||    
T  6009460 aattatccctc-tccgtttgttttggctgttaaatgacta 6009422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 117 - 254
Target Start/End: Complemental strand, 15348332 - 15348198
Alignment:
Q  117 tgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgt 216  Q
    ||||| |||||||| ||||||||||||||||||| |||||||||||||  ||||||||||||| |||||||||||||| ||||||||||||  |||||||    
T  15348332 tgagtaaataggcagaaacccccctgaaattgtagctttcgtcaaaaa-tcccctgatttttaggaaacttcaaaaaa-ccccctgaaattgacaaacgt 15348235  T
Q  217 tagtcaattaccccccttccgtttgttttggctgttaa 254  Q
    |||||||||| |||||||||||||||||||||||||||    
T  15348234 tagtcaatta-cccccttccgtttgttttggctgttaa 15348198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 118 - 260
Target Start/End: Original strand, 6008641 - 6008781
Alignment:
Q  118 gagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgtt 217  Q
    |||| ||||||||||||  |||||||||||||| ||||||||||||||| |||||||||||| |||||||| ||||| ||||||||||||  ||||||||    
T  6008641 gagtaaataggcaaaaaaacccctgaaattgtagctttcgtcaaaaacctccctgatttttaggaaacttc-aaaaagccccctgaaattgacaaacgtt 6008739  T
Q  218 agtcaattaccccccttccgtttgttttggctgttaagtgact 260  Q
    ||||||| ||||||| ||| ||||||||||||||||| |||||    
T  6008740 agtcaatcacccccc-tccatttgttttggctgttaaatgact 6008781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 10917875 - 10917973
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    |||||||||||||||||||||||||||||||||||||||| ||||   |||  || |||||||||||||||||| |||| |||  |||||||||||||||    
T  10917875 acccccctgaaattgtaactttcgtcaaaaacccccctgaattttgcaaaatgtc-aaaaacccccctgaaattgtcaagcgtctgtcaattacccccct 10917973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 136 - 233
Target Start/End: Original strand, 4137673 - 4137769
Alignment:
Q  136 ccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    |||||||||||||||||||||||||||||||||||||| ||||   |||  || |||||||||||||||||| |||| |||  |||||||||||||||    
T  4137673 ccccctgaaattgtaactttcgtcaaaaacccccctgaattttgtaaaatgtc-aaaaacccccctgaaattgtcaagcgtctgtcaattacccccct 4137769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 4139013 - 4138916
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    |||||||||||||||||||||||||||||||||||||||| ||||   |||  |||||||  |||||||||||| |||| |||  |||||||||||||||    
T  4139013 acccccctgaaattgtaactttcgtcaaaaacccccctgaattttgcaaaatgtcaaaaa--ccccctgaaattgtcaagcgtcggtcaattacccccct 4138916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 134 - 229
Target Start/End: Complemental strand, 1387690 - 1387596
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccc 229  Q
    |||||||||||||||||||||||||||||||||||||||| ||||   |||  || |||||||||| ||||||| |||| |||  |||||||||||    
T  1387690 acccccctgaaattgtaactttcgtcaaaaacccccctgaattttgcaaaatgtc-aaaaacccccttgaaattgtcaagcgtctgtcaattaccc 1387596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 137 - 233
Target Start/End: Complemental strand, 10919367 - 10919272
Alignment:
Q  137 cccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    ||||||||||||||||||||||||||||||| | ||| ||||   |||  || |||||||||||||||||| |||| |||  |||||||||||||||    
T  10919367 cccctgaaattgtaactttcgtcaaaaacccacatgaattttgcaaaatgtc-aaaaacccccctgaaattgtcaagcgtctgtcaattacccccct 10919272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 15347663 - 15347710
Alignment:
Q  349 tttaagaaacaacaacatcatgatcaacatcacacactttctaatgat 396  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  15347663 tttaagaaacaacaacatcatcatcaacatcgcacactttctaatgat 15347710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 233
Target Start/End: Original strand, 1378477 - 1378568
Alignment:
Q  140 ctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    |||||||||||||||||||||||||||||| ||| ||||   |||  |||||||  |||||||||||| |||| |||  |||||||||||||||    
T  1378477 ctgaaattgtaactttcgtcaaaaacccccttgaattttgcaaaatgtcaaaaa--ccccctgaaattgtcaagcgtctgtcaattacccccct 1378568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 233
Target Start/End: Original strand, 1386225 - 1386316
Alignment:
Q  140 ctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    |||||||||||||||||||||||||||||| ||| ||||   |||  |||||||  |||||||||||| |||| |||  |||||||||||||||    
T  1386225 ctgaaattgtaactttcgtcaaaaacccccttgaattttgcaaaatgtcaaaaa--ccccctgaaattgtcaagcgtctgtcaattacccccct 1386316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 396
Target Start/End: Complemental strand, 6009313 - 6009273
Alignment:
Q  356 aacaacaacatcatgatcaacatcacacactttctaatgat 396  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  6009313 aacaacaacatcatcatcaacatcacacactttctaatgat 6009273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 254
Target Start/End: Original strand, 1792644 - 1792753
Alignment:
Q  143 aaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccccccttccgtttgt 242  Q
    ||||||||||||| |||||||| |||| ||| ||  ||||| ||||||||| ||||| | ||||| |||| ||||  |||||||  |||| || ||||||    
T  1792644 aaattgtaacttttgtcaaaaatccccttgacttcaaagaatcttcaaaaaccccccataaaattgtcaagcgttgctcaatta--ccccatctgtttgt 1792741  T
Q  243 tttggctgttaa 254  Q
    |||||| |||||    
T  1792742 tttggcagttaa 1792753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 396
Target Start/End: Original strand, 30709739 - 30709776
Alignment:
Q  359 aacaacatcatgatcaacatcacacactttctaatgat 396  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  30709739 aacaacatcatcatcaacatcacacactttataatgat 30709776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 7984625 - 7984705
Alignment:
Q  17 taaacgtcatacctacacaactctcaatgtaaaagttactacatttacatgtttaaacaatgtcctaacgacacttgttag 97  Q
    |||| |||||| ||||| || | ||||||||||| || |||| |||  ||| |||||||||||||||| | ||||||||||    
T  7984625 taaaagtcataactacaaaattttcaatgtaaaatttgctacttttggatgcttaaacaatgtcctaagggcacttgttag 7984705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 396
Target Start/End: Complemental strand, 17732698 - 17732658
Alignment:
Q  356 aacaacaacatcatgatcaacatcacacactttctaatgat 396  Q
    ||||||| |||||| |||||| |||||||||||||||||||    
T  17732698 aacaacatcatcatcatcaacctcacacactttctaatgat 17732658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 133; Significance: 5e-69; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 117 - 261
Target Start/End: Original strand, 5347722 - 5347865
Alignment:
Q  117 tgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgt 216  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5347722 tgagtgaataggcaaaaacccctctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttc-aaaaacccccctgaaattatcaaacgt 5347820  T
Q  217 tagtcaattaccccccttccgtttgttttggctgttaagtgacta 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  5347821 tagtcaattaccccccttccgtttgttttggctgttaagtgacta 5347865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 115 - 260
Target Start/End: Complemental strand, 5348644 - 5348501
Alignment:
Q  115 tttgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaac 214  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||  |||||    
T  5348644 tttgagtaaataggcaaaaacccccctgaaattgtagctttcgtcaaaaacccccctgatttttaggaaacttcaaaaaac-cccctgaaattgacaaac 5348546  T
Q  215 gttagtcaattaccccccttccgtttgttttggctgttaagtgact 260  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||    
T  5348545 gttagtcaattacccccc-tccgtttgttttggctgttaaatgact 5348501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 118 - 261
Target Start/End: Original strand, 36429282 - 36429423
Alignment:
Q  118 gagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgtt 217  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||     
T  36429282 gagtgaataggccaaaaaccccctgaaattgtaactttcgtcaaaaatccccctgatttttaagaaacttc-aaaaacgcccctgaaattatcaaacgtc 36429380  T
Q  218 agtcaattaccccccttccgtttgttttggctgttaagtgacta 261  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||    
T  36429381 agtcaattacccccc-tccgtttgttttggctgttaaatgacta 36429423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 108 - 261
Target Start/End: Complemental strand, 36681994 - 36681845
Alignment:
Q  108 atttatttttgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaatt 207  Q
    |||||||| ||||||||||| |||||| |||| |||||||||||||||||| ||||| ||||||||||||||| |||||||   |||||||| |||||||    
T  36681994 atttatttatgagtgaatagacaaaaatccccttgaaattgtaactttcgttaaaaatccccctgatttttaaaaaacttc---aaacccccatgaaatt 36681898  T
Q  208 atcaaacgttagtcaattaccccccttccgtttgttttggctgttaagtgacta 261  Q
     |||||||||||||||||||||||| ||||||||||||| ||||||| ||||||    
T  36681897 gtcaaacgttagtcaattacccccc-tccgtttgttttgactgttaaatgacta 36681845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 110 - 260
Target Start/End: Original strand, 31808269 - 31808417
Alignment:
Q  110 ttatttttgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattat 209  Q
    ||||| ||||||||||||||||||| | ||||||| |||||||||||||||||||   ||||||||||||||||||||| |||||| | ||||||||| |    
T  31808269 ttattgttgagtgaataggcaaaaatctccctgaatttgtaactttcgtcaaaaatttccctgatttttaagaaacttc-aaaaactctcctgaaattgt 31808367  T
Q  210 caaacgttagtcaattaccccccttccgtttgttttggctgttaagtgact 260  Q
     |||||||||||||||||||||| || |||||||||||||||||| |||||    
T  31808368 taaacgttagtcaattacccccc-tcagtttgttttggctgttaaatgact 31808417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 118 - 261
Target Start/End: Original strand, 7491248 - 7491392
Alignment:
Q  118 gagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaactt--caaaaaacccccctgaaattatcaaacg 215  Q
    ||||||||||||||| |||| ||| |||||||||||||||||||||| | |||||| |||||||||||||   ||||||  ||||||||||| | |||||    
T  7491248 gagtgaataggcaaacaccctcctaaaattgtaactttcgtcaaaaatcaccctgacttttaagaaacttaaaaaaaaaaacccctgaaattgtgaaacg 7491347  T
Q  216 ttagtcaattaccccccttccgtttgttttggctgttaagtgacta 261  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||    
T  7491348 ttagtcaattacccccctt-cgtttgttttggctgttaaatgacta 7491392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 143 - 254
Target Start/End: Complemental strand, 10326955 - 10326845
Alignment:
Q  143 aaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccccccttccgtttgt 242  Q
    |||||||||||||||||||||||| || ||||||||||||||||| ||||||    | ||||||| |||||| |||||||| |||||||| ||||| |||    
T  10326955 aaattgtaactttcgtcaaaaacctccatgatttttaagaaacttaaaaaaaaaatcttgaaattgtcaaacattagtcaactacccccc-tccgtctgt 10326857  T
Q  243 tttggctgttaa 254  Q
    ||||||||||||    
T  10326856 tttggctgttaa 10326845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 118 - 253
Target Start/End: Complemental strand, 33136723 - 33136590
Alignment:
Q  118 gagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgtt 217  Q
    ||||||||||||||||| |||  ||||| ||||||||| |||||||| | |||| ||||||   |||||||||||| | ||||||||||| | |||||||    
T  33136723 gagtgaataggcaaaaatccctttgaaagtgtaacttttgtcaaaaaactccctaatttttgcaaaacttcaaaaa-ctcccctgaaattgttaaacgtt 33136625  T
Q  218 agtcaattaccccccttccgtttgttttggctgtta 253  Q
    ||||||||||||||| ||| | ||||||||||||||    
T  33136624 agtcaattacccccc-tccatctgttttggctgtta 33136590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 116 - 233
Target Start/End: Original strand, 19897390 - 19897506
Alignment:
Q  116 ttgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacg 215  Q
    |||||| ||||| |||  |||||||||||||||||||||||||||||||||||||||| ||||   |||  || |||||||||||||||||| |||| ||    
T  19897390 ttgagtaaatagtcaattacccccctgaaattgtaactttcgtcaaaaacccccctgaattttgtaaaatgtc-aaaaacccccctgaaattgtcaagcg 19897488  T
Q  216 ttagtcaattacccccct 233  Q
    |  |||||||||||||||    
T  19897489 tctgtcaattacccccct 19897506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 138 - 261
Target Start/End: Original strand, 29500028 - 29500150
Alignment:
Q  138 ccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccccccttccg 237  Q
    |||| ||||| ||||||| || ||||| |||||| ||||||||||||||||| ||| | | | | ||||| |||||||||||||||||||||| | ||||    
T  29500028 ccctcaaattataacttttgttaaaaatccccctaatttttaagaaacttcataaacctctcataaaattgtcaaacgttagtcaattacccctc-tccg 29500126  T
Q  238 tttgttttggctgttaagtgacta 261  Q
    |||||||||||| |||| ||||||    
T  29500127 tttgttttggctcttaaatgacta 29500150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 5347949 - 5348001
Alignment:
Q  344 aaaaatttaagaaacaacaacatcatgatcaacatcacacactttctaatgat 396  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5347949 aaaaatttaagaaacaacaacatcatcatcaacatcacacactttctaatgat 5348001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 190 - 261
Target Start/End: Complemental strand, 36430130 - 36430060
Alignment:
Q  190 aaaaacccccctgaaattatcaaacgttagtcaattaccccccttccgtttgttttggctgttaagtgacta 261  Q
    ||||||||||||||||||  |||||||||||||||||| |||| ||||||||||||||||||||| ||||||    
T  36430130 aaaaacccccctgaaattgccaaacgttagtcaattac-ccccatccgtttgttttggctgttaaatgacta 36430060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 43492867 - 43492769
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||   |||| || ||||| |||||||||||| |||| |||  |||||||||||||||    
T  43492867 acccccctgaaattgtaactttcgtcaaaaccccccctgaattttgcaaaacatc-aaaaatccccctgaaattgtcaagcgtctgtcaattacccccct 43492769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 136 - 233
Target Start/End: Original strand, 34088593 - 34088688
Alignment:
Q  136 ccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    |||||||||||||||||||||||||||||||||||||| ||||   |||  |||||||  |||||||||||| |||| |||  |||||||||||||||    
T  34088593 ccccctgaaattgtaactttcgtcaaaaacccccctgaattttgcaaaatgtcaaaaa--ccccctgaaattgtcaagcgtctgtcaattacccccct 34088688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 116 - 233
Target Start/End: Original strand, 17640351 - 17640467
Alignment:
Q  116 ttgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacg 215  Q
    |||||| ||||| |||  ||||||||||||||||||||||||||||||| |||||||| |||    |||  || |||||||||||||||||| |||| ||    
T  17640351 ttgagtaaatagtcaattacccccctgaaattgtaactttcgtcaaaaatccccctgaatttggtaaaatgtc-aaaaacccccctgaaattgtcaagcg 17640449  T
Q  216 ttagtcaattacccccct 233  Q
    |  |||||||||||||||    
T  17640450 tctgtcaattacccccct 17640467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 136 - 233
Target Start/End: Complemental strand, 26626667 - 26626570
Alignment:
Q  136 ccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    |||||||||||||||||||||||||||||| ||||||| ||||   |||| ||||||  ||||||||||||| |||| |||  ||||||||| |||||    
T  26626667 ccccctgaaattgtaactttcgtcaaaaactcccctgaattttgtaaaacgtcaaaacccccccctgaaattgtcaagcgtctgtcaattacgcccct 26626570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 36430172 - 36430117
Alignment:
Q  118 gagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctga 173  Q
    |||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  36430172 gagtaaataggcaaaaacccccttgaaattgtagctttcgtcaaaaacccccctga 36430117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 38559587 - 38559685
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||   |||  || |||||||||||||||||| |||| | |  |||||||||||||||    
T  38559587 acccccctgaaattgtaactttcgtcaaaaactcccctgaattttgcaaaatgtc-aaaaacccccctgaaattgtcaagcatctgtcaattacccccct 38559685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 136 - 231
Target Start/End: Complemental strand, 38561238 - 38561144
Alignment:
Q  136 ccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccccc 231  Q
    ||||||||||||||||||||||||||||||||| |||| ||||   |||  |||||||| |||||||||||| |||| |||  |||||||||||||    
T  38561238 ccccctgaaattgtaactttcgtcaaaaacccctctgaattttgcaaaatgtcaaaaaa-ccccctgaaattgtcaagcgtctgtcaattaccccc 38561144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 261
Target Start/End: Complemental strand, 7493347 - 7493203
Alignment:
Q  117 tgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaa-cccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacg 215  Q
    |||||||||||||||||  || | |||||| ||||||||||| ||||| || |||| |||||||||||| |||||||| | ||| | ||||| |||||      
T  7493347 tgagtgaataggcaaaattcctcttgaaatcgtaactttcgtaaaaaatcctccctaatttttaagaaatttcaaaaacctcccataaaattgtcaaata 7493248  T
Q  216 ttagtcaattaccccccttccgtttgttttggctgttaagtgacta 261  Q
    ||||||||||| |  || || ||||||||||| |||||| ||||||    
T  7493247 ttagtcaattatcttcc-tctgtttgttttggttgttaaatgacta 7493203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 17641814 - 17641770
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctgattttt 178  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  17641814 acccccctgaaattgtaactttcgtcaaaaacccccctgaatttt 17641770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 233
Target Start/End: Complemental strand, 23094862 - 23094739
Alignment:
Q  109 tttatttttgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaatta 208  Q
    ||||| ||||||| ||||| |||  |||||| |||||||||||||||||||||||| || ||||| ||||   |||  || ||||||||||||||||||     
T  23094862 tttatatttgagtaaatagtcaattacccccttgaaattgtaactttcgtcaaaaaacctcctgaattttgcaaaatgtc-aaaaacccccctgaaattg 23094764  T
Q  209 tcaaacgttagtcaattacccccct 233  Q
    |||| |||  |||||||| ||||||    
T  23094763 tcaagcgtatgtcaattatccccct 23094739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 260
Target Start/End: Complemental strand, 29500817 - 29500700
Alignment:
Q  141 tgaaattgtaactttcgtcaaaaacccccc-tgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccccccttccgtt 239  Q
    ||||||| ||| ||||||||||||| |||| | | |||||||||| |||||||||  ||  ||||||| ||||||||||||||||||||  |  ||||||    
T  29500817 tgaaattataattttcgtcaaaaactccccataacttttaagaaagttcaaaaaaatcct-tgaaattgtcaaacgttagtcaattaccttc--tccgtt 29500721  T
Q  240 tgttttggctgttaagtgact 260  Q
    |||||||| |||||| |||||    
T  29500720 tgttttggttgttaaatgact 29500700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 261
Target Start/End: Original strand, 36681037 - 36681175
Alignment:
Q  117 tgagtgaataggcaaaaacccccctg-aaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacg 215  Q
    ||||||||||| |||||| ||||||  ||||||||||||| |||||||| |  |||  |||  || ||||||||||||  |||  ||||||| |||||||    
T  36681037 tgagtgaatagacaaaaatcccccttcaaattgtaacttttgtcaaaaatcttcctacttt--aaaaaacttcaaaaa--ccctttgaaattgtcaaacg 36681132  T
Q  216 ttagtcaattaccccccttccgtttgttttggctgttaagtgacta 261  Q
    ||||||||||||||||    |||| |||||||||||||| ||||||    
T  36681133 ttagtcaattaccccc---tcgttcgttttggctgttaaatgacta 36681175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 34384993 - 34385085
Alignment:
Q  137 cccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccc 229  Q
    ||||||||||||||| |||||||||||| |||| ||| ||||   |||| ||||||| ||||| ||||||| |||| |||  |||||||||||    
T  34384993 cccctgaaattgtaattttcgtcaaaaaaccccttgaattttgcaaaacgtcaaaaaccccccttgaaattgtcaagcgtctgtcaattaccc 34385085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 173
Target Start/End: Original strand, 23093255 - 23093294
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctga 173  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  23093255 acccccctgaaattgtaactttcgtcaaaaaaccccctga 23093294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 225
Target Start/End: Original strand, 5874256 - 5874365
Alignment:
Q  115 tttgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaac 214  Q
    ||||||||||||||||||||| ||  | |||||   |||||||||| ||| || |||| ||||||| ||||||| ||||||||   ||||||| ||||||    
T  5874256 tttgagtgaataggcaaaaacacctttaaaattagtactttcgtcataaatcctcctggtttttaaaaaacttc-aaaaacccttttgaaattgtcaaac 5874354  T
Q  215 gttagtcaatt 225  Q
    ||| |||||||    
T  5874355 gttggtcaatt 5874365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 19898904 - 19898860
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctgattttt 178  Q
    |||||||| ||||||||||||| ||||||||||||||||| ||||    
T  19898904 acccccctaaaattgtaacttttgtcaaaaacccccctgaatttt 19898860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 233
Target Start/End: Original strand, 1301245 - 1301339
Alignment:
Q  136 ccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    |||| ||||||||||||||| ||||||||||||||||| ||||   |||  |||||||    |||||||||| |||| |||  |||||||||||||||    
T  1301245 ccccttgaaattgtaacttttgtcaaaaacccccctgaattttgcaaaatgtcaaaaa---tccctgaaattgtcaagcgtctgtcaattacccccct 1301339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 140 - 231
Target Start/End: Complemental strand, 1302881 - 1302791
Alignment:
Q  140 ctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccccc 231  Q
    ||||||||||||||||||||||||| |||||| | ||||   |||  || ||||| |||||||||||| |||| |||  |||||||||||||    
T  1302881 ctgaaattgtaactttcgtcaaaaatccccctaaattttgtaaaatgtc-aaaaatccccctgaaattgtcaagcgtctgtcaattaccccc 1302791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 249
Target Start/End: Complemental strand, 21012487 - 21012417
Alignment:
Q  176 tttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccccccttccgtttgttttggct 249  Q
    |||||||||||||||||  ||| | ||||||| |||||||||| ||||||||||||  || |||||||||||||    
T  21012487 tttaagaaacttcaaaac-cccacttgaaattgtcaaacgttaatcaattaccccc--tctgtttgttttggct 21012417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 178
Target Start/End: Original strand, 26625059 - 26625101
Alignment:
Q  136 ccccctgaaattgtaactttcgtcaaaaacccccctgattttt 178  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||    
T  26625059 ccccctgaaattgtaactttcgtaaaaaaccctcctgaatttt 26625101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 168
Target Start/End: Original strand, 43492563 - 43492593
Alignment:
Q  138 ccctgaaattgtaactttcgtcaaaaacccc 168  Q
    |||||||||||||||||||||||||||||||    
T  43492563 ccctgaaattgtaactttcgtcaaaaacccc 43492593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 971352 - 971298
Alignment:
Q  140 ctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacc 196  Q
    |||||||||||| |||||||||||| ||   |||||||||||| |||||||||||||    
T  971352 ctgaaattgtaattttcgtcaaaaaacct--tgatttttaagagacttcaaaaaacc 971298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 2054077 - 2054154
Alignment:
Q  17 taaacgtcatacctacacaactctcaatgtaaaagttactacatttacatgtttaaacaatgtcctaacgacacttgt 94  Q
    |||| |||||| || ||||| | ||||||||||| | ||||| |||| |||||||||||||| ||||| |||| ||||    
T  2054077 taaaagtcataactgcacaattttcaatgtaaaaatgactacttttatatgtttaaacaatgccctaaagacatttgt 2054154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 233
Target Start/End: Complemental strand, 34090047 - 34089951
Alignment:
Q  136 ccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    |||||||||||||||||||||||||||||  || |||| ||||   |||  || ||||||||| |||||||| |||| |||  |||||||| ||||||    
T  34090047 ccccctgaaattgtaactttcgtcaaaaattcctctgaattttgcaaaatgtc-aaaaacccctctgaaattgtcaagcgtctgtcaattatccccct 34089951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 564960 - 564904
Alignment:
Q  41 caatgtaaaagttactacatttacatgtttaaacaatgtcctaacgacacttgttag 97  Q
    ||||| |||||||||||  |||| ||| |||||||||||||||| |||| |||||||    
T  564960 caatgcaaaagttactatttttagatgcttaaacaatgtcctaaggacatttgttag 564904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 118 - 261
Target Start/End: Original strand, 4592627 - 4592769
Alignment:
Q  118 gagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  4592627 gagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttc-aaaaacccccatgaaattatcaaacgtt 4592725  T
Q  218 agtcaattaccccccttccgtttgttttggctgttaagtgacta 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  4592726 agtcaattaccccccttccgtttgttttggctgttaagtgacta 4592769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 116 - 260
Target Start/End: Complemental strand, 10256627 - 10256485
Alignment:
Q  116 ttgagtgaataggcaaaaacccccct-gaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaac 214  Q
    |||||| ||||||||||||   |||| ||||||||| ||||||||||||||||||||||||| || |||||||||||||  ||||||||||||  |||||    
T  10256627 ttgagtaaataggcaaaaaaaacccttgaaattgtagctttcgtcaaaaacccccctgatttctaggaaacttcaaaaa--ccccctgaaattgccaaac 10256530  T
Q  215 gttagtcaattaccccccttccgtttgttttggctgttaagtgact 260  Q
    |||||||||||||||| | |||||||||||||||| |||| |||||    
T  10256529 gttagtcaattaccccgc-tccgtttgttttggctattaaatgact 10256485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 117 - 260
Target Start/End: Complemental strand, 4593540 - 4593399
Alignment:
Q  117 tgagtgaataggcaaaaacc-cccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacg 215  Q
    ||||| ||||||||||||   ||||||||| |||| |||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||  ||||||    
T  4593540 tgagtaaataggcaaaaaaaacccctgaaaatgtagctttcgtcaaaaaccccc-tgatttttaggaaacttcaaaaaac-cccctgaaattgacaaacg 4593443  T
Q  216 ttagtcaattaccccccttccgtttgttttggctgttaagtgact 260  Q
    | ||||||||| ||||| ||||||||||||||||||||| |||||    
T  4593442 tcagtcaattatccccc-tccgtttgttttggctgttaaatgact 4593399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 138 - 254
Target Start/End: Complemental strand, 22539226 - 22539115
Alignment:
Q  138 ccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccccccttccg 237  Q
    |||||||||||||||||||||||| ||||||| ||| |||||| |||||||||||||||||  ||||||| ||||||||||||||||||||||   ||||    
T  22539226 ccctgaaattgtaactttcgtcaagaaccccc-tgacttttaaaaaacttcaaaaaacccca-tgaaattgtcaaacgttagtcaattacccc---tccg 22539132  T
Q  238 tttgttttggctgttaa 254  Q
    | |||||||||||||||    
T  22539131 tatgttttggctgttaa 22539115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 45115006 - 45114914
Alignment:
Q  140 ctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||| |||| ||| | ||||||| |||||||||||| ||||||||||||    
T  45115006 ctgaaattgtaactttcgtcaaaaacccccttgacttttaagaaacttc-aaaacccctcatgaaattgtcaaacgttagttaattacccccct 45114914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 117 - 233
Target Start/End: Complemental strand, 39619389 - 39619273
Alignment:
Q  117 tgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgt 216  Q
    ||||| ||||| |||  |||| |||||||||||| |||||||||||||||||||||| ||||   |||||| ||| | ||||||||||||| |||| |||    
T  39619389 tgagtaaatagtcaattaccctcctgaaattgtagctttcgtcaaaaacccccctgaattttgcaaaactttaaataccccccctgaaattgtcaagcgt 39619290  T
Q  217 tagtcaattacccccct 233  Q
    | |||||||||||||||    
T  39619289 ttgtcaattacccccct 39619273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 4592853 - 4592905
Alignment:
Q  344 aaaaatttaagaaacaacaacatcatgatcaacatcacacactttctaatgat 396  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4592853 aaaaatttaagaaacaacaacatcatcatcaacatcacacactttctaatgat 4592905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 190 - 261
Target Start/End: Original strand, 10255740 - 10255810
Alignment:
Q  190 aaaaacccccctgaaattatcaaacgttagtcaattaccccccttccgtttgttttggctgttaagtgacta 261  Q
    ||||| |||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||    
T  10255740 aaaaagccccttgaaattatcaaacgtcagtcaattacccccc-tccgtttgttttggctgttaaatgacta 10255810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 33003831 - 33003741
Alignment:
Q  142 gaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    ||||||||||||||||| |||||  || |||||||||||||||||| ||||||  ||| ||||||| ||||||||| |||||||||||||||    
T  33003831 gaaattgtaactttcgtaaaaaaaaccgctgatttttaagaaactt-aaaaaattcccttgaaattgtcaaacgttggtcaattacccccct 33003741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 134 - 229
Target Start/End: Complemental strand, 36657728 - 36657634
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccc 229  Q
    |||||||| |||||||||||||||||||||||  |||||| ||||   |||||||| ||||||| |||||||||||||||||| |||||| |||||    
T  36657728 acccccctaaaattgtaactttcgtcaaaaacttccctgaattttgcaaaacttca-aaaaccctcctgaaattatcaaacgtcagtcaaataccc 36657634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 142 - 254
Target Start/End: Original strand, 33002900 - 33003009
Alignment:
Q  142 gaaattgtaactttcgtcaaaaacccccct-gatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccccccttccgttt 240  Q
    ||||||||||||||| | |||||  ||||| ||||||||||||||||||||||  | |  ||||||| |||||||||||| ||||||||||  |||||||    
T  33002900 gaaattgtaactttcataaaaaaaaccccttgatttttaagaaacttcaaaaa--ctcgatgaaattgtcaaacgttagttaattaccccc--tccgttt 33002995  T
Q  241 gttttggctgttaa 254  Q
    ||||||| ||||||    
T  33002996 gttttggatgttaa 33003009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 137 - 233
Target Start/End: Original strand, 10865201 - 10865296
Alignment:
Q  137 cccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||   |||  || |||||||| |||||||||||||| |||  |||||||||||||||    
T  10865201 cccctgaaattgtaacttttgtcaaaaaccctcctgaattttgcaaaatgtc-aaaaaccctcctgaaattatcaagcgtctgtcaattacccccct 10865296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 39618044 - 39618141
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    ||||||||||||||||| ||||||||||||| |||||| | ||||   |||||||||| |  |||||||||||| |||| |||  |||||||||||||||    
T  39618044 acccccctgaaattgtagctttcgtcaaaaaaccccctaaattttgcaaaacttcaaata--ccccctgaaattgtcaagcgtctgtcaattacccccct 39618141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 233
Target Start/End: Original strand, 36764770 - 36764867
Alignment:
Q  136 ccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    ||||| ||||||||||||||||||||||| |||||| | ||||   |||| ||||||| ||||||  ||||| |||| |||  |||||||||||||||    
T  36764770 ccccccgaaattgtaactttcgtcaaaaatcccccttaattttgcaaaacgtcaaaaacccccccaaaaattgtcaagcgtctgtcaattacccccct 36764867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 10255694 - 10255749
Alignment:
Q  115 tttgagtgaataggcaaaaacc-cccctgaaattgtaactttcgtcaaaaaccccc 169  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||||| ||||    
T  10255694 tttgagtgaataggcaaaaaaaacccctgaaattgtaactttcgtcaaaaagcccc 10255749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 207
Target Start/End: Original strand, 28780080 - 28780169
Alignment:
Q  117 tgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaatt 207  Q
    ||||| |||||||||  |||||||||||||||||| |||||||||  ||||||||||  || |  ||||||| ||| ||||||||||||||    
T  28780080 tgagtaaataggcaactacccccctgaaattgtaagtttcgtcaattacccccctgaaattaagaaaacttc-aaatacccccctgaaatt 28780169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 45227240 - 45227327
Alignment:
Q  142 gaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccccc 231  Q
    ||||||||||||||||||||||| |||| ||| ||||   |||| ||  ||||||||||||||||| |||| |||  |||||||| ||||    
T  45227240 gaaattgtaactttcgtcaaaaaaccccttgaattttgtaaaacgtc--aaaacccccctgaaattgtcaagcgtctgtcaattatcccc 45227327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 396
Target Start/End: Original strand, 10255919 - 10255956
Alignment:
Q  359 aacaacatcatgatcaacatcacacactttctaatgat 396  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  10255919 aacaacatcatcatcaacatcacacactttataatgat 10255956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 5e-66; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 118 - 261
Target Start/End: Original strand, 14790672 - 14790814
Alignment:
Q  118 gagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgtt 217  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  14790672 gagtaaataggcaaaaaaccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaa-acccccctgaaattatcaaacgtt 14790770  T
Q  218 agtcaattaccccccttccgtttgttttggctgttaagtgacta 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  14790771 agtcaattaccccccttccgtttgttttggctgttaagtgacta 14790814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 116 - 260
Target Start/End: Complemental strand, 14791591 - 14791449
Alignment:
Q  116 ttgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacg 215  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||  ||||||    
T  14791591 ttgagtaaataggcaaaaacccccctgaaattgtagctttcgtcaaaaacccccctgatttttaggaaacttcaaaaaac-cccctgaaattgacaaacg 14791493  T
Q  216 ttagtcaattaccccccttccgtttgttttggctgttaagtgact 260  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||    
T  14791492 ttagtcaattacccccc-tccgtttgttttggctgttaaatgact 14791449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 118 - 261
Target Start/End: Complemental strand, 20112411 - 20112271
Alignment:
Q  118 gagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgtt 217  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||  ||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  20112411 gagtgaataggcaaaaacccctctgaaattgtaactttcgtaaaaaaaacccctgatttttaagaaacttca-aaaaccccactgaaattatcaaacgtt 20112313  T
Q  218 agtcaattaccccccttccgtttgttttggctgttaagtgacta 261  Q
    ||||||||||||||  ||||||||||||||||||||| ||||||    
T  20112312 agtcaattaccccc--tccgtttgttttggctgttaaatgacta 20112271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 33012667 - 33012767
Alignment:
Q  17 taaacgtcatacctacacaactctcaatgtaaaagttactacatttacatgtttaaacaatgtcctaacgacacttgttagaaaatctataatttatttt 116  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||    
T  33012667 taaatgtcatacctacacaactctcaatgtaaaaattactacatttacatgtttaaacaatgccctaatgacacttgttagaaaatctataatttttttt 33012766  T
Q  117 t 117  Q
    |    
T  33012767 t 33012767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 115 - 231
Target Start/End: Original strand, 14864969 - 14865084
Alignment:
Q  115 tttgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaac 214  Q
    ||||||| ||||| |||  |||||||||||||||||||||||||||||||||||||||| ||||   |||  || |||||||||||||||||| |||| |    
T  14864969 tttgagtaaatagtcaattacccccctgaaattgtaactttcgtcaaaaacccccctgaattttgtaaaatgtc-aaaaacccccctgaaattgtcaagc 14865067  T
Q  215 gttagtcaattaccccc 231  Q
    ||  |||||||||||||    
T  14865068 gtctgtcaattaccccc 14865084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 117 - 254
Target Start/End: Original strand, 20111491 - 20111625
Alignment:
Q  117 tgagtgaataggcaaaaacccccct-gaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacg 215  Q
    ||||| ||||||||||||| ||||| | ||||||| ||||||||||||  |||||| ||||||| |||| |||||||| || || | ||||| ||||||     
T  20111491 tgagtaaataggcaaaaactccccttgtaattgtagctttcgtcaaaa--ccccctaatttttaggaaatttcaaaaatcctcc-taaaattgtcaaaca 20111587  T
Q  216 ttagtcaattaccccccttccgtttgttttggctgttaa 254  Q
    ||||||||||||||||| |||||||||||| ||||||||    
T  20111588 ttagtcaattacccccc-tccgtttgttttagctgttaa 20111625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 136 - 233
Target Start/End: Original strand, 32672308 - 32672404
Alignment:
Q  136 ccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    |||||||||||||||||||||||||||||||||||||| ||||   |||  || |||||||||||||||||| |||| |||  |||||||||||||||    
T  32672308 ccccctgaaattgtaactttcgtcaaaaacccccctgaattttgcaaaatgtc-aaaaacccccctgaaattgtcaagcgtctgtcaattacccccct 32672404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 137 - 233
Target Start/End: Complemental strand, 767700 - 767605
Alignment:
Q  137 cccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    ||||||||||||||||||||||||||||||||||||| ||||   |||  || |||||||||||||||||| |||| |||  |||||||||||||||    
T  767700 cccctgaaattgtaactttcgtcaaaaacccccctgaattttgcaaaatgtc-aaaaacccccctgaaattgtcaagcgtctgtcaattacccccct 767605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 14790899 - 14790951
Alignment:
Q  344 aaaaatttaagaaacaacaacatcatgatcaacatcacacactttctaatgat 396  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14790899 aaaaatttaagaaacaacaacatcatcatcaacatcacacactttctaatgat 14790951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 117 - 233
Target Start/End: Complemental strand, 35124741 - 35124626
Alignment:
Q  117 tgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgt 216  Q
    ||||| ||||| |||  |||||||||||||||||||||||||||||||||||||||| ||||   |||  || ||||| |||||||||||| |||| |||    
T  35124741 tgagtaaatagtcaattacccccctgaaattgtaactttcgtcaaaaacccccctgaattttgcaaaatgtc-aaaaatccccctgaaattgtcaagcgt 35124643  T
Q  217 tagtcaattacccccct 233  Q
      |||||||||||||||    
T  35124642 ctgtcaattacccccct 35124626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 116 - 233
Target Start/End: Complemental strand, 11681684 - 11681568
Alignment:
Q  116 ttgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacg 215  Q
    |||||| ||||| |||  |||||||||||||||||||||||||||||||||||| ||| ||||   |||  || |||||||||||||||||| | || ||    
T  11681684 ttgagtaaatagtcaattacccccctgaaattgtaactttcgtcaaaaacccccttgaattttgcaaaatgtc-aaaaacccccctgaaattgttaagcg 11681586  T
Q  216 ttagtcaattacccccct 233  Q
    |  |||||||||||||||    
T  11681585 tctgtcaattacccccct 11681568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 11680186 - 11680284
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    |||| |||||||||||||||||||||||||| |||||||| ||||   |||  || |||||||||||||||||| |||| |||  |||||||||||||||    
T  11680186 accctcctgaaattgtaactttcgtcaaaaatccccctgaattttgcaaaatgtc-aaaaacccccctgaaattgtcaagcgtctgtcaattacccccct 11680284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 140 - 231
Target Start/End: Original strand, 21190065 - 21190155
Alignment:
Q  140 ctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccccc 231  Q
    |||||||| ||||||| |||||||  |||| ||| ||||||| ||||| ||||||| ||  |||||||||||||||||||||||||||||||    
T  21190065 ctgaaattataacttttgtcaaaagaccccttgaattttaaggaactttaaaaaactcca-tgaaattatcaaacgttagtcaattaccccc 21190155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 136 - 233
Target Start/End: Original strand, 35123254 - 35123350
Alignment:
Q  136 ccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    ||||||||||||||||||||||||||||| |||||||| ||||   |||  || |||||||||||||||||| |||| |||  |||||||| ||||||    
T  35123254 ccccctgaaattgtaactttcgtcaaaaatccccctgaattttgcaaaatgtc-aaaaacccccctgaaattgtcaagcgtctgtcaattatccccct 35123350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 14866206 - 14866109
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccccc 231  Q
    ||||||||||||||||||||||| ||||||| |||||||| ||||   |||  |||||||  ||| |||||||| |||| |||  |||||||||||||    
T  14866206 acccccctgaaattgtaactttcttcaaaaatccccctgaattttgcaaaatgtcaaaaactccctctgaaattgtcaagcgtctgtcaattaccccc 14866109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 27243089 - 27242993
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccccc 231  Q
    |||||||||||||| ||||||||||||||||||||| ||| ||||   |||  || |||||| ||||||||||| |||| |||  |||||||||||||    
T  27243089 acccccctgaaattataactttcgtcaaaaacccccatgaattttgcaaaatgtc-aaaaactcccctgaaattgtcaagcgtccgtcaattaccccc 27242993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 27254664 - 27254568
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccccc 231  Q
    |||||||||||||| ||||||||||||||||||||| ||| ||||   |||  || |||||| ||||||||||| |||| |||  |||||||||||||    
T  27254664 acccccctgaaattataactttcgtcaaaaacccccatgaattttgcaaaatgtc-aaaaactcccctgaaattgtcaagcgtccgtcaattaccccc 27254568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 239
Target Start/End: Complemental strand, 32673774 - 32673670
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    |||| ||| ||||||||||||||||||||||   |||||| ||||   |||  || |||||||||||||||||| |||| |||  |||||||||||||||    
T  32673774 accctcctcaaattgtaactttcgtcaaaaatttccctgaattttgcaaaatatc-aaaaacccccctgaaattgtcaagcgtctgtcaattacccccct 32673676  T
Q  234 tccgtt 239  Q
    ||||||    
T  32673675 tccgtt 32673670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 32219554 - 32219650
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccccc 231  Q
    |||||| ||||||||||| |||||||||||| | |||| | ||||   ||||||| ||| |||||||||||||| |||| |||  |||||||||||||    
T  32219554 acccccttgaaattgtaattttcgtcaaaaatctccctaaattttgcaaaacttc-aaatacccccctgaaattgtcaagcgtctgtcaattaccccc 32219650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 45105524 - 45105567
Alignment:
Q  200 ctgaaattatcaaacgttagtcaattaccccccttccgtttgttt 244  Q
    |||||||| |||||||||||||||||||||||| |||||||||||    
T  45105524 ctgaaattgtcaaacgttagtcaattacccccc-tccgtttgttt 45105567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 44395728 - 44395783
Alignment:
Q  41 caatgtaaaagttactacatttacatgtttaaacaatgtcctaacgacacttgtta 96  Q
    ||||||||||||| |||| |||| |||||||||||||| ||| | |||||||||||    
T  44395728 caatgtaaaagttgctacttttaaatgtttaaacaatgccctcatgacacttgtta 44395783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 178
Target Start/End: Original strand, 27241619 - 27241661
Alignment:
Q  136 ccccctgaaattgtaactttcgtcaaaaacccccctgattttt 178  Q
    |||||| ||||||||||||||||||||||| ||||||| ||||    
T  27241619 ccccctaaaattgtaactttcgtcaaaaactcccctgaatttt 27241661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 178
Target Start/End: Original strand, 27247492 - 27247534
Alignment:
Q  136 ccccctgaaattgtaactttcgtcaaaaacccccctgattttt 178  Q
    |||||| ||||||||||||||||||||||| ||||||| ||||    
T  27247492 ccccctaaaattgtaactttcgtcaaaaactcccctgaatttt 27247534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 233
Target Start/End: Complemental strand, 12128177 - 12128081
Alignment:
Q  136 ccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    ||||||| |||||||||||||||||||||  | ||||| ||||   ||||||| ||| || ||| ||||||| |||| |||  |||||||||||||||    
T  12128177 ccccctggaattgtaactttcgtcaaaaattctcctgaattttgcaaaacttc-aaatactcccttgaaattgtcaagcgtctgtcaattacccccct 12128081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 396
Target Start/End: Complemental strand, 20112160 - 20112123
Alignment:
Q  359 aacaacatcatgatcaacatcacacactttctaatgat 396  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  20112160 aacaacatcatcatcaacatcacacactttataatgat 20112123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 26544581 - 26544659
Alignment:
Q  175 ttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtc-aattaccccccttccgtttgttttggctgttaa 254  Q
    ||||||||||||| ||||| | ||| ||||||| ||||||||||||| ||||| ||||| || ||||||||||||| ||||    
T  26544581 ttttaagaaacttgaaaaa-cacccttgaaattgtcaaacgttagtcaaattaaccccc-tctgtttgttttggctattaa 26544659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 4e-54; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 113 - 260
Target Start/End: Complemental strand, 621676 - 621531
Alignment:
Q  113 tttttgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaa 212  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||  |||    
T  621676 tttttgagtaaataggcaaaaacccccctgaaattgtagctttcgtcaaaaacccccctgatttttaggaaacttca-aaaacccccctgaaattgacaa 621578  T
Q  213 acgttagtcaattaccccccttccgtttgttttggctgttaagtgact 260  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||    
T  621577 acgttagtcaattacccccc-tccgtttgttttggctgttaaatgact 621531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 118 - 261
Target Start/End: Original strand, 27454917 - 27455057
Alignment:
Q  118 gagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgtt 217  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||  ||||||||||||||||     
T  27454917 gagtgaataggcaaaaacccc-ctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaactt-gaaaaacccctttgaaattatcaaacgtc 27455014  T
Q  218 agtcaattaccccccttccgtttgttttggctgttaagtgacta 261  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||    
T  27455015 agtcaattacccccc-tccgtttgttttggctgttaaatgacta 27455057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 118 - 260
Target Start/End: Original strand, 620470 - 620610
Alignment:
Q  118 gagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgtt 217  Q
    |||| |||||||||||||||| |||||||||||  |||||||||||| |||||||||||||| |||||||| ||||||||||||||||||  ||||||||    
T  620470 gagtaaataggcaaaaacccctctgaaattgtagttttcgtcaaaaatccccctgatttttaggaaacttc-aaaaacccccctgaaattgacaaacgtt 620568  T
Q  218 agtcaattaccccccttccgtttgttttggctgttaagtgact 260  Q
    ||||||||||||||| ||||||||||||||||||||| |||||    
T  620569 agtcaattacccccc-tccgtttgttttggctgttaaatgact 620610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 115 - 261
Target Start/End: Original strand, 21225796 - 21225938
Alignment:
Q  115 tttgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaac 214  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||| |  | |||||||||||||||||  |||||| ||  ||||||| ||||||    
T  21225796 tttgagtgaataggcaaaa-cccacctgaaattgtaactttcgtcaaaaatcttcttgatttttaagaaactt-taaaaacacctttgaaattgtcaaac 21225893  T
Q  215 gttagtcaattaccccccttccgtttgttttggctgttaagtgacta 261  Q
     |||||||||||||| |  ||||||||||||||||||||| ||||||    
T  21225894 cttagtcaattaccctc--tccgtttgttttggctgttaaatgacta 21225938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 117 - 231
Target Start/End: Complemental strand, 49682167 - 49682055
Alignment:
Q  117 tgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgt 216  Q
    |||||||||||||||||| || | ||||||||||||||||||||||||   |||| |||||||||||||||||||||   |||||||||||||||| |||    
T  49682167 tgagtgaataggcaaaaatcctcttgaaattgtaactttcgtcaaaaaattccctaatttttaagaaacttcaaaaa--tcccctgaaattatcaatcgt 49682070  T
Q  217 tagtcaattaccccc 231  Q
    |||||||||||||||    
T  49682069 tagtcaattaccccc 49682055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 118 - 260
Target Start/End: Original strand, 49681264 - 49681402
Alignment:
Q  118 gagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgtt 217  Q
    |||| ||||||||||||| ||||| |||||||| |||| ||||||||| |||||||||||||  ||||||| ||||||||| |||||||| ||||||| |    
T  49681264 gagtaaataggcaaaaactcccct-aaattgtagcttttgtcaaaaactcccctgatttttagaaaacttc-aaaaacccctctgaaattgtcaaacgct 49681361  T
Q  218 agtcaattaccccccttccgtttgttttggctgttaagtgact 260  Q
    ||| ||||| ||||  ||||||||||||||||||||| |||||    
T  49681362 agttaattatcccc--tccgtttgttttggctgttaaatgact 49681402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 108 - 233
Target Start/End: Original strand, 56063637 - 56063762
Alignment:
Q  108 atttatttttgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaatt 207  Q
    |||| |||| |||| ||||| |||  ||||||||||||||||||||||| |||||||||||||||| ||||   |||  |||||||||||||||||||||    
T  56063637 attttttttggagtaaatagtcaattacccccctgaaattgtaactttcatcaaaaacccccctgaattttgcaaaatgtcaaaaaacccccctgaaatt 56063736  T
Q  208 atcaaacgttagtcaattacccccct 233  Q
     |||| |||  |||||||||||||||    
T  56063737 gtcaagcgtctgtcaattacccccct 56063762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 139 - 254
Target Start/End: Complemental strand, 31633726 - 31633614
Alignment:
Q  139 cctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccccccttccgt 238  Q
    |||||||||| || ||||||||||||||||| | ||||||||||||||||| ||||||||| | ||||| |||||| |||||| |||||||||  |||||    
T  31633726 cctgaaattggaagtttcgtcaaaaacccccttaatttttaagaaacttca-aaaacccccataaaattgtcaaacattagtccattaccccc--tccgt 31633630  T
Q  239 ttgttttggctgttaa 254  Q
    |||||| |||||||||    
T  31633629 ttgtttgggctgttaa 31633614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 116 - 233
Target Start/End: Complemental strand, 16508259 - 16508143
Alignment:
Q  116 ttgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacg 215  Q
    |||||| ||||| |||  |||||||||||||||||||||||||||||||||||||||| ||||   |||  || |||||||||||||||||| |||| ||    
T  16508259 ttgagtaaatagtcaattacccccctgaaattgtaactttcgtcaaaaacccccctgaattttgcaaaatgtc-aaaaacccccctgaaattgtcaagcg 16508161  T
Q  216 ttagtcaattacccccct 233  Q
    |  |||||||||||||||    
T  16508160 tctgtcaattacccccct 16508143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 116 - 254
Target Start/End: Complemental strand, 21226659 - 21226525
Alignment:
Q  116 ttgagtgaataggcaaaaacc-cccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaac 214  Q
    |||||||||||||||||||   ||||| ||||||||||||| |||||||| || ||||| |||||||||| ||||||||  ||| |||||||| | ||||    
T  21226659 ttgagtgaataggcaaaaaaaacccctcaaattgtaactttagtcaaaaa-cctcctgacttttaagaaatttcaaaaa--ccctctgaaattgttaaac 21226563  T
Q  215 gttagtcaattaccccccttccgtttgttttggctgttaa 254  Q
     ||||||||||||||||  |||||||||||||||| ||||    
T  21226562 attagtcaattaccccc--tccgtttgttttggctattaa 21226525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 112 - 233
Target Start/End: Complemental strand, 50664542 - 50664422
Alignment:
Q  112 atttttgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatca 211  Q
    ||||| |||| ||||| |||  |||||||||||||||||||||||||||||||||||||||| ||||   |||  || |||||||||||||||||| |||    
T  50664542 attttggagtaaatagtcaattacccccctgaaattgtaactttcgtcaaaaacccccctgaattttgcaaaatgtc-aaaaacccccctgaaattgtca 50664444  T
Q  212 aacgttagtcaattacccccct 233  Q
    | |||  |||||||||||||||    
T  50664443 agcgtctgtcaattacccccct 50664422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 135 - 231
Target Start/End: Complemental strand, 23102399 - 23102304
Alignment:
Q  135 cccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccccc 231  Q
    |||||||||||||||| |||||||||||||||||||||| ||||   ||||||| ||| |||||||||||||| |||| |||| |||||||||||||    
T  23102399 cccccctgaaattgtagctttcgtcaaaaacccccctgaattttgcaaaacttc-aaatacccccctgaaattgtcaagcgtttgtcaattaccccc 23102304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 2613647 - 2613745
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    |||||||||||||||||||||||||||||||||||||||| ||||   |||  || |||||||||||||||||| |||| |||  |||||||||||||||    
T  2613647 acccccctgaaattgtaactttcgtcaaaaacccccctgaattttgcaaaatgtc-aaaaacccccctgaaattgtcaagcgtctgtcaattacccccct 2613745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 50663011 - 50663109
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    |||||||||||||||||||||||||||||||||||||||| ||||   |||  || |||||||||||||||||| |||| |||  |||||||||||||||    
T  50663011 acccccctgaaattgtaactttcgtcaaaaacccccctgaattttgcaaaatgtc-aaaaacccccctgaaattgtcaagcgtctgtcaattacccccct 50663109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 170 - 254
Target Start/End: Original strand, 11147797 - 11147879
Alignment:
Q  170 ctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccccccttccgtttgttttggctgttaa 254  Q
    |||| |||||||||||||||||||  |||  ||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  11147797 ctgacttttaagaaacttcaaaaattccct-tgaaattgtcaaacgttagtcaattacccccc-tccgtttgttttggctgttaa 11147879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 117 - 233
Target Start/End: Original strand, 16506868 - 16506983
Alignment:
Q  117 tgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgt 216  Q
    ||||| ||||| |||  ||||||||||||||||||||||||||||||| |||||||| ||||   |||  || |||||||||||||||||| |||| |||    
T  16506868 tgagtaaatagtcaattacccccctgaaattgtaactttcgtcaaaaaaccccctgaattttgcaaaatgtc-aaaaacccccctgaaattgtcaagcgt 16506966  T
Q  217 tagtcaattacccccct 233  Q
      |||||||||||||||    
T  16506967 ctgtcaattacccccct 16506983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 115 - 254
Target Start/End: Original strand, 31632379 - 31632514
Alignment:
Q  115 tttgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaac 214  Q
    ||||||| |||||| |||||   || |||||||  || |||||||||||||  || ||||||||||||||||||  ||||||| ||| ||||| ||||||    
T  31632379 tttgagtaaataggtaaaaaaaaccttgaaattagaagtttcgtcaaaaacttccatgatttttaagaaacttc--aaaaccctcct-aaattgtcaaac 31632475  T
Q  215 gttagtcaattaccccccttccgtttgttttggctgttaa 254  Q
    ||||||||||| |||||| ||||||||||| |||||||||    
T  31632476 gttagtcaattgcccccc-tccgtttgtttgggctgttaa 31632514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 261
Target Start/End: Original strand, 21224243 - 21224385
Alignment:
Q  115 tttgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaac 214  Q
    ||||||||||||||||||| | | |||||||||||||||||||| ||||| |   ||||||||||| ||| ||| |||||| ||  ||||||| ||||||    
T  21224243 tttgagtgaataggcaaaa-ctcgcctgaaattgtaactttcgtaaaaaatctttctgatttttaaaaaatttc-aaaaacacctatgaaattgtcaaac 21224340  T
Q  215 gttagtcaattaccccccttccgtttgttttggctgttaagtgacta 261  Q
     ||||||||||  ||||  ||||||| ||||||||||||| ||||||    
T  21224341 cttagtcaatt--cccctctccgtttattttggctgttaaatgacta 21224385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 55978491 - 55978589
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||   |||  || |||||||||||||||||| |||| |||  |||||||||||||||    
T  55978491 acccccctgaaattgtaactttcgtcaaaaactcccctgaattttgcaaaatgtc-aaaaacccccctgaaattgtcaagcgtctgtcaattacccccct 55978589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 27455823 - 27455765
Alignment:
Q  115 tttgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctga 173  Q
    ||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  27455823 tttgagtaaataggcaaaaacccccttgaaattgtagctttcgtcaaaaacccccctga 27455765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 136 - 233
Target Start/End: Complemental strand, 56065247 - 56065151
Alignment:
Q  136 ccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    |||||||||||||||||||||||||||||||||| ||| ||||   |||  || |||||||||||||||||| |||| |||  |||||||||||||||    
T  56065247 ccccctgaaattgtaactttcgtcaaaaacccccatgaattttgcaaaatgtc-aaaaacccccctgaaattgtcaagcgtctgtcaattacccccct 56065151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 117 - 233
Target Start/End: Original strand, 23100937 - 23101052
Alignment:
Q  117 tgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgt 216  Q
    ||||| ||||| |||  |||||||| |||||||| |||||||||||||||||||||| ||||   ||||||| ||| |||||||| ||||| |||| |||    
T  23100937 tgagtaaatagtcaattacccccctaaaattgtacctttcgtcaaaaacccccctgaattttgcaaaacttc-aaatacccccctaaaattgtcaagcgt 23101035  T
Q  217 tagtcaattacccccct 233  Q
      |||||||||||||||    
T  23101036 ctgtcaattacccccct 23101052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 190 - 261
Target Start/End: Complemental strand, 27455778 - 27455708
Alignment:
Q  190 aaaaacccccctgaaattatcaaacgttagtcaattaccccccttccgtttgttttggctgttaagtgacta 261  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||||||||||| ||||| ||||||    
T  27455778 aaaaacccccctgaaattgccaaatgttagtcaattacccccc-tccgtttgttttggcagttaaatgacta 27455708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 115 - 233
Target Start/End: Complemental strand, 2217269 - 2217152
Alignment:
Q  115 tttgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaac 214  Q
    ||||||| ||||| |||  |||||| |||||||||||||||||||||||||| || ||| ||||   |||  || |||||||||||||||||| |||| |    
T  2217269 tttgagtaaatagtcaattacccccttgaaattgtaactttcgtcaaaaacctccatgaattttgcaaaatgtc-aaaaacccccctgaaattgtcaagc 2217171  T
Q  215 gttagtcaattacccccct 233  Q
    ||  |||||||||||||||    
T  2217170 gtctgtcaattacccccct 2217152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 116 - 253
Target Start/End: Complemental strand, 31779996 - 31779860
Alignment:
Q  116 ttgagtgaataggcaaaaaccccc-ctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaac 214  Q
    |||||||||||||| |||| |||| |||||||||||||||| ||||||||| |   ||||||||   ||||||  |||||| || || ||||| | ||||    
T  31779996 ttgagtgaataggcgaaaatcccctctgaaattgtaacttttgtcaaaaactctattgatttttgcaaaactt-taaaaactcctctaaaattgttaaac 31779898  T
Q  215 gttagtcaattaccccccttccgtttgttttggctgtta 253  Q
    |||||||||||||||||||| | | ||||||||||||||    
T  31779897 gttagtcaattacccccctt-catctgttttggctgtta 31779860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 235
Target Start/End: Original strand, 677062 - 677162
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||   ||| |  ||||||||||  ||||||| |||| |||  |||||||||||||||    
T  677062 acccccctgaaattgtaactttcgtcaaaaaccctcctgaatttt-gcaaaatgtaaaaaacccctatgaaattgtcaagcgtctgtcaattacccccct 677160  T
Q  234 tc 235  Q
    ||    
T  677161 tc 677162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 137 - 233
Target Start/End: Complemental strand, 52897809 - 52897714
Alignment:
Q  137 cccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    ||||||||||||||||||||||||||||||||||||| ||||   |||  ||||||||  || |||||||| |||| |||  |||||||||||||||    
T  52897809 cccctgaaattgtaactttcgtcaaaaacccccctgaattttgcaaaatgtcaaaaaa-acctctgaaattgtcaagcgtcggtcaattacccccct 52897714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 254
Target Start/End: Complemental strand, 11148180 - 11148098
Alignment:
Q  169 cctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccccccttccgtttgttttggctgttaa 254  Q
    ||||| ||||||||||||||||||| |||   ||||||| ||||| |||||||||||||||||  |||||||||||||| ||||||    
T  11148180 cctgacttttaagaaacttcaaaaa-cccttatgaaattgtcaaatgttagtcaattaccccc--tccgtttgttttggttgttaa 11148098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 3880872 - 3880909
Alignment:
Q  136 ccccctgaaattgtaactttcgtcaaaaacccccctga 173  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3880872 ccccctgaaattgtaactttcgtcaaaaacccccctga 3880909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 233
Target Start/End: Original strand, 31779729 - 31779846
Alignment:
Q  118 gagtgaataggcaaaaacccc-cctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttc-aaaaaacccccctgaaattatcaaacg 215  Q
    |||||||||||||||||   | ||||||||||||||||| |||||||| || ||||||||||   ||| ||| ||||||   |||||||||| | |||||    
T  31779729 gagtgaataggcaaaaaaatctcctgaaattgtaacttttgtcaaaaatcctcctgatttttgcaaaatttcaaaaaaaaaaccctgaaattgttaaacg 31779828  T
Q  216 ttagtcaattacccccct 233  Q
    ||||||||||| ||||||    
T  31779829 ttagtcaattatccccct 31779846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 233
Target Start/End: Original strand, 2215784 - 2215899
Alignment:
Q  117 tgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgt 216  Q
    ||||| ||||| |||  |||||||| ||||||||||||||||||||||||| | ||| ||||   |||  || ||||||||||||||||||  ||| |||    
T  2215784 tgagtaaatagtcaattacccccctaaaattgtaactttcgtcaaaaaccctcatgaattttgcaaaatgtc-aaaaacccccctgaaattgccaagcgt 2215882  T
Q  217 tagtcaattacccccct 233  Q
      |||||||||||||||    
T  2215883 ctgtcaattacccccct 2215899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 396
Target Start/End: Complemental strand, 49681918 - 49681878
Alignment:
Q  356 aacaacaacatcatgatcaacatcacacactttctaatgat 396  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  49681918 aacaacaacatcatcatcaacatcacacactttctaatgat 49681878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 2615120 - 2615022
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    |||||||||||||||||||||||||||||||  | | ||| ||||   |||  || |||||||||||||||||| |||| |||  |||||||||||||||    
T  2615120 acccccctgaaattgtaactttcgtcaaaaaaacacatgaattttgcaaaatgtc-aaaaacccccctgaaattgtcaagcgtctgtcaattacccccct 2615022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 233
Target Start/End: Original strand, 52896329 - 52896420
Alignment:
Q  141 tgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    |||||||||||||||||||||||||||| |||| ||||   |||  || |||||||| | ||||||| |||| |||  |||||||||||||||    
T  52896329 tgaaattgtaactttcgtcaaaaacccctctgaattttgtaaaatgtc-aaaaaccctcttgaaattgtcaagcgtctgtcaattacccccct 52896420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 5865447 - 5865492
Alignment:
Q  117 tgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaa 163  Q
    ||||||||||||||||| ||||| | |||||||||||||||||||||    
T  5865447 tgagtgaataggcaaaa-cccccttaaaattgtaactttcgtcaaaa 5865492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 6194990 - 6194940
Alignment:
Q  123 aataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctga 173  Q
    |||||||||  |||||||||||||||||| |||||||||  ||||||||||    
T  6194990 aataggcaattacccccctgaaattgtaagtttcgtcaattacccccctga 6194940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 396
Target Start/End: Original strand, 27455168 - 27455205
Alignment:
Q  359 aacaacatcatgatcaacatcacacactttctaatgat 396  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  27455168 aacaacatcatcatcaacatcacacactttataatgat 27455205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 30317557 - 30317601
Alignment:
Q  117 tgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaa 161  Q
    ||||| |||||||||  |||||||||||||||||| |||||||||    
T  30317557 tgagtaaataggcaattacccccctgaaattgtaagtttcgtcaa 30317601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 37624906 - 37624962
Alignment:
Q  40 tcaatgtaaaagttactacatttacatgtttaaacaatgtcctaacgacacttgtta 96  Q
    |||||| |||||||||||| |||| ||| |||||||||||||| | | |||||||||    
T  37624906 tcaatgcaaaagttactacttttagatgcttaaacaatgtccttaaggcacttgtta 37624962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 101; Significance: 6e-50; HSPs: 3)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 117 - 261
Target Start/End: Original strand, 32350 - 32493
Alignment:
Q  117 tgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgt 216  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||| | |||||||||||||||    
T  32350 tgagtgaataggcaaaaaccctcctgaaattgtaactttcgtcaaaaatccctctgatttttaagaaacttcaaaaaccccctcggaaattatcaaacgt 32449  T
Q  217 tagtcaattaccccccttccgtttgttttggctgttaagtgacta 261  Q
    |||||||| ||||| | ||||||||||||||||||||| ||||||    
T  32450 tagtcaataacccctc-tccgtttgttttggctgttaaatgacta 32493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 118 - 261
Target Start/End: Complemental strand, 33280 - 33138
Alignment:
Q  118 gagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgtt 217  Q
    |||| ||||||||||||   || |||||||||| ||||||| |||||| ||||||||||||| |||||||| |||||||||||||||||| |||||||||    
T  33280 gagtaaataggcaaaaaaaaccttgaaattgtagctttcgtaaaaaactcccctgatttttaggaaacttccaaaaacccccctgaaattgtcaaacgtt 33181  T
Q  218 agtcaattaccccccttccgtttgttttggctgttaagtgacta 261  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||    
T  33180 agtcaattacccccc-tccgtttgttttggctgttaaatgacta 33138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 396
Target Start/End: Original strand, 32602 - 32639
Alignment:
Q  359 aacaacatcatgatcaacatcacacactttctaatgat 396  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  32602 aacaacatcatcatcaacatcacacactttctaatgat 32639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 113 - 261
Target Start/End: Complemental strand, 47445917 - 47445769
Alignment:
Q  113 tttttgagtgaataggcaaaaaccccc-ctgaaattgtaactttcgtcaaaaa-cccccctgatttttaagaaacttcaaaaaacccccctgaaattatc 210  Q
    ||||||||||||||||||||||||||| |||||||||||| |||| ||||||| |||||||||||||||||||||||||||||| |||| ||||||||||    
T  47445917 tttttgagtgaataggcaaaaaccccctctgaaattgtaattttcatcaaaaatcccccctgatttttaagaaacttcaaaaaaacccc-tgaaattatc 47445819  T
Q  211 aaacgttagtcaattaccccccttccgtttgttttggctgttaagtgacta 261  Q
    |||||||||||||||||||||| ||| |||||||||| |||||| ||||||    
T  47445818 aaacgttagtcaattacccccc-tccatttgttttggttgttaaatgacta 47445769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 118 - 254
Target Start/End: Original strand, 47444988 - 47445122
Alignment:
Q  118 gagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgtt 217  Q
    |||| ||||| |||||| ||||||||||||||| |||||||||||| ||||||||||||| | |||||||| |||||||||| ||||||| |||||||||    
T  47444988 gagtaaatagccaaaaaaccccctgaaattgtagctttcgtcaaaaccccccctgattttcaggaaacttc-aaaaacccccatgaaattgtcaaacgtt 47445086  T
Q  218 agtcaattaccccccttccgtttgttttggctgttaa 254  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  47445087 agtcaattacccccc-tccgtttattttggctgttaa 47445122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 118 - 260
Target Start/End: Complemental strand, 36476106 - 36475966
Alignment:
Q  118 gagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgtt 217  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||   || | |||||||||||||| |||||||||| ||||||| | |||||||    
T  36476106 gagtgaataggcaaaaaccctcctgaaattgtaactttcgtcaaaaccctatctaacttttaagaaacttc-aaaaacccccatgaaattgttaaacgtt 36476008  T
Q  218 agtcaattaccccccttccgtttgttttggctgttaagtgact 260  Q
    ||||||||||||||| ||| ||||||||||||||||| |||||    
T  36476007 agtcaattacccccc-tccatttgttttggctgttaaatgact 36475966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 139 - 260
Target Start/End: Original strand, 27585312 - 27585429
Alignment:
Q  139 cctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccccccttccgt 238  Q
    |||||||||||| ||||||||||||| |||||  |||||||||||||||||||||  |||||||||||| ||||||||||||| ||||||||| || |||    
T  27585312 cctgaaattgtacctttcgtcaaaaatccccca-atttttaagaaacttcaaaaa--ccccctgaaattgtcaaacgttagtcgattacccccatt-cgt 27585407  T
Q  239 ttgttttggctgttaagtgact 260  Q
    |||||||||||||||| |||||    
T  27585408 ttgttttggctgttaaatgact 27585429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 115 - 259
Target Start/End: Original strand, 36475268 - 36475411
Alignment:
Q  115 tttgagtgaataggcaaaaacccccct-gaaattgtaactttcgtcaaaaacccccc-tgatttttaagaaacttcaaaaaacccccctgaaattatcaa 212  Q
    ||||||||||||||||||||   |||| ||||||||||||||||||||||| |  || |||||||||||||||||||||| |  ||| ||||||| | ||    
T  36475268 tttgagtgaataggcaaaaaaatcccttgaaattgtaactttcgtcaaaaaacttccatgatttttaagaaacttcaaaagaaaccc-tgaaattgttaa 36475366  T
Q  213 acgttagtcaattaccccccttccgtttgttttggctgttaagtgac 259  Q
    |||||||||||||||||||  ||||||||||||||||||||| ||||    
T  36475367 acgttagtcaattaccccc--tccgtttgttttggctgttaaatgac 36475411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 117 - 254
Target Start/End: Complemental strand, 27586120 - 27585987
Alignment:
Q  117 tgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgt 216  Q
    ||||||||||||||||||   || |||||||||||||||||| |||||  ||||  | ||||||||||||||||||||  | ||||||||| | ||||||    
T  27586120 tgagtgaataggcaaaaaaaaccttgaaattgtaactttcgttaaaaaatccccatacttttaagaaacttcaaaaaa--ctcctgaaattgttaaacgt 27586023  T
Q  217 tagtcaattaccccccttccgtttgttttggctgttaa 254  Q
    |||||||||||||||  ||| |||||| ||||||||||    
T  27586022 tagtcaattaccccc--tccatttgttatggctgttaa 27585987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 117 - 233
Target Start/End: Complemental strand, 11343470 - 11343355
Alignment:
Q  117 tgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgt 216  Q
    ||||| ||||| |||  |||||||||||||||||||||||||||||||||||||||| ||||   |||  || |||||||||||||||||| |||| |||    
T  11343470 tgagtaaatagtcaattacccccctgaaattgtaactttcgtcaaaaacccccctgaattttgcaaaatgtc-aaaaacccccctgaaattgtcaagcgt 11343372  T
Q  217 tagtcaattacccccct 233  Q
      |||||||||||||||    
T  11343371 ctgtcaattacccccct 11343355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 117 - 233
Target Start/End: Complemental strand, 11501490 - 11501375
Alignment:
Q  117 tgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgt 216  Q
    ||||| ||||| |||  |||||||||||||||||||||||||||||||||||||||| ||||   |||  || |||||||||||||||||| |||| |||    
T  11501490 tgagtaaatagtcaattacccccctgaaattgtaactttcgtcaaaaacccccctgaattttgcaaaatgtc-aaaaacccccctgaaattgtcaagcgt 11501392  T
Q  217 tagtcaattacccccct 233  Q
      |||||||||||||||    
T  11501391 ctgtcaattacccccct 11501375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 141 - 254
Target Start/End: Original strand, 45575952 - 45576061
Alignment:
Q  141 tgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccccccttccgttt 240  Q
    |||||||| || ||||||||||||||||| |||||||||| |||||||  ||||| ||| | ||||| |||||||||||||||||||||||  |||||||    
T  45575952 tgaaattgaaagtttcgtcaaaaacccccatgatttttaaaaaacttc--aaaactcccataaaattgtcaaacgttagtcaattaccccc--tccgttt 45576047  T
Q  241 gttttggctgttaa 254  Q
    |||| |||| ||||    
T  45576048 gtttgggctattaa 45576061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 786734 - 786843
Alignment:
Q  117 tgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaac-ccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacg 215  Q
    ||||| ||| |||||||||| || |||||| |||| |||| | |||||  ||||||||||||||||||||||||||||| |||| | |||||||||||||    
T  786734 tgagtaaattggcaaaaacctccttgaaatcgtaagtttcataaaaaaatccccctgatttttaagaaacttcaaaaaa-ccccataaaattatcaaacg 786832  T
Q  216 ttagtcaatta 226  Q
    |||||||||||    
T  786833 ttagtcaatta 786843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 117 - 233
Target Start/End: Original strand, 14282779 - 14282894
Alignment:
Q  117 tgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgt 216  Q
    ||||| ||||| |||  |||||||||||||||||||||||||||||||||||||||| ||||   |||  || |||||||||||||| ||| |||| |||    
T  14282779 tgagtaaatagtcaattacccccctgaaattgtaactttcgtcaaaaacccccctgaattttgcaaaatgtc-aaaaacccccctgatattgtcaagcgt 14282877  T
Q  217 tagtcaattacccccct 233  Q
      |||||||||||||||    
T  14282878 ctgtcaattacccccct 14282894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 117 - 233
Target Start/End: Complemental strand, 14284309 - 14284194
Alignment:
Q  117 tgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgt 216  Q
    ||||| ||||| |||  |||||||||||||||||||||||||||||||||||||||| ||||   ||| |   |||||||||||||||||| |||| |||    
T  14284309 tgagtaaatagtcaattacccccctgaaattgtaactttcgtcaaaaacccccctgaatttt-gcaaaatgttaaaaacccccctgaaattgtcaagcgt 14284211  T
Q  217 tagtcaattacccccct 233  Q
      |||||||||||||||    
T  14284210 ctgtcaattacccccct 14284194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 136 - 233
Target Start/End: Complemental strand, 4564248 - 4564152
Alignment:
Q  136 ccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    |||| ||||||||||||||||||||||||||||||||| ||||   |||  || |||||||||||||||||| |||| |||  |||||||||||||||    
T  4564248 ccccttgaaattgtaactttcgtcaaaaacccccctgaattttgcaaaatgtc-aaaaacccccctgaaattgtcaagcgtctgtcaattacccccct 4564152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 136 - 233
Target Start/End: Complemental strand, 41707101 - 41707005
Alignment:
Q  136 ccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    |||||||||||||||||||||||||||||  ||||||| ||||   |||| || |||||||||||||||||| |||| |||  |||||||||||||||    
T  41707101 ccccctgaaattgtaactttcgtcaaaaaaacccctgaattttgcaaaacgtc-aaaaacccccctgaaattgtcaagcgtctgtcaattacccccct 41707005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 11341985 - 11342083
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    ||||| ||||||||||||||||||||||||| |||||||| ||||   |||  || |||||||||||||||||| |||| |||  |||||||||||||||    
T  11341985 acccctctgaaattgtaactttcgtcaaaaatccccctgaattttgcaaaatgtc-aaaaacccccctgaaattgtcaagcgtctgtcaattacccccct 11342083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 11500004 - 11500102
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    ||||| ||||||||||||||||||||||||| |||||||| ||||   |||  || |||||||||||||||||| |||| |||  |||||||||||||||    
T  11500004 acccctctgaaattgtaactttcgtcaaaaatccccctgaattttgcaaaatgtc-aaaaacccccctgaaattgtcaagcgtctgtcaattacccccct 11500102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 42813894 - 42813796
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||   |||  ||||||||   |||||||||| |||| |||  |||||||||||||||    
T  42813894 acccctctgaaattgtaactttcgtcaaaaacccccctgaattttgcaaaatgtcaaaaaa-aaccctgaaattgtcaagcgtctgtcaattacccccct 42813796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 178
Target Start/End: Complemental strand, 38482563 - 38482521
Alignment:
Q  136 ccccctgaaattgtaactttcgtcaaaaacccccctgattttt 178  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  38482563 ccccctgaaattgtaactttcgtcaaaaacccccctgaatttt 38482521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 233
Target Start/End: Complemental strand, 41729980 - 41729856
Alignment:
Q  108 atttatttttgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaatt 207  Q
    |||||| || |||| ||||| |||  || ||||||||||||||| ||||||||||||||||||| | ||||   |||  || ||||||||||||||||||    
T  41729980 atttatattggagtaaatagtcaattacacccctgaaattgtaattttcgtcaaaaacccccctaaattttgcaaaatgtc-aaaaacccccctgaaatt 41729882  T
Q  208 atcaaacgttagtcaattacccccct 233  Q
     |||| |||  |||||||| ||||||    
T  41729881 gtcaagcgtctgtcaattatccccct 41729856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 233
Target Start/End: Original strand, 42813248 - 42813343
Alignment:
Q  137 cccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    |||||||||||||||||||| |||||||||||||||| ||||   |||  || |||||| |||||||||||  ||| |||  |||||||||||||||    
T  42813248 cccctgaaattgtaactttcatcaaaaacccccctgaattttgccaaatgtc-aaaaactcccctgaaattgccaagcgtcggtcaattacccccct 42813343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 233
Target Start/End: Original strand, 16420135 - 16420231
Alignment:
Q  136 ccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||   |||  || |||||||||||||||||| | || |||   ||||||||||||||    
T  16420135 ccccctgaaattgtaactttcgttaaaaatccccctgaattttgcaaaatatc-aaaaacccccctgaaattgtaaagcgtctatcaattacccccct 16420231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 16422194 - 16422126
Alignment:
Q  102 tctataatttatttttgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccc 170  Q
    ||||| |||||| | ||||| ||||| |||  ||||||||||| |||||||||||||||||| ||||||    
T  16422194 tctatcatttatatatgagtaaatagtcaattacccccctgaagttgtaactttcgtcaaaaccccccc 16422126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 396
Target Start/End: Complemental strand, 47445660 - 47445620
Alignment:
Q  356 aacaacaacatcatgatcaacatcacacactttctaatgat 396  Q
    |||||||||||||| |||||||||||||| |||||||||||    
T  47445660 aacaacaacatcatcatcaacatcacacattttctaatgat 47445620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 45577346 - 45577292
Alignment:
Q  173 atttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattac 227  Q
    ||||||||||||||| ||||||   || ||||||| |||||||||||||||||||    
T  45577346 atttttaagaaacttaaaaaaaaaaccttgaaattgtcaaacgttagtcaattac 45577292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 228
Target Start/End: Original strand, 46318776 - 46318869
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacc 228  Q
    |||||| | ||||||||||||||||||||| ||||||||| ||||   ||| |  ||||||||||||||||||  |||| |||  ||||||||||    
T  46318776 acccccataaaattgtaactttcgtcaaaaccccccctgaatttt-gcaaaatgtaaaaaacccccctgaaatggtcaagcgtctgtcaattacc 46318869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 207
Target Start/End: Complemental strand, 52360426 - 52360337
Alignment:
Q  118 gagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaatt 207  Q
    |||| |||||||||  ||||| |||||||||||| |||| ||||  ||||||||||  || || |||||||||  | |||||||||||||    
T  52360426 gagtaaataggcaattaccccactgaaattgtaagtttcatcaattacccccctgaaattaaaaaaacttcaattaccccccctgaaatt 52360337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 24646514 - 24646463
Alignment:
Q  176 tttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacc 228  Q
    |||||||||||||| ||||||| | ||||||| |||||||||| |||||||||    
T  24646514 tttaagaaacttca-aaaaccctcatgaaattgtcaaacgttaatcaattacc 24646463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 235
Target Start/End: Complemental strand, 46319187 - 46319143
Alignment:
Q  191 aaaacccccctgaaattatcaaacgttagtcaattaccccccttc 235  Q
    ||||||||||||||||| |||| |||  |||||||||||||||||    
T  46319187 aaaacccccctgaaattgtcaagcgtctgtcaattaccccccttc 46319143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 118 - 253
Target Start/End: Complemental strand, 3987371 - 3987239
Alignment:
Q  118 gagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgtt 217  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||   || ||||||| |||||||||    
T  3987371 gagtgaataggcaaaaagccccctgaaattgtaactttcgtcaaaaatcctcctgatttttaagaaactt-aaaaaaaaaccttgaaattgtcaaacgtt 3987273  T
Q  218 agtcaattaccccccttccgtttgttttggctgtta 253  Q
    ||||||||||||||  ||||||||||||||||||||    
T  3987272 agtcaattaccccc--tccgtttgttttggctgtta 3987239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 117 - 261
Target Start/End: Original strand, 36067295 - 36067435
Alignment:
Q  117 tgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgt 216  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| || |||||| |||||||||| ||| |||| |    
T  36067295 tgagtgaataggcaaaaaccctcctgaaattgtaactttcgtcaaaatcccccctgatttttaagaaattttaaaaaa-ccccctgaaa-tattaaacat 36067392  T
Q  217 tagtcaattaccccccttccgtttgttttggctgttaagtgacta 261  Q
    |||||||||||||||  ||||||| ||||||| ||||| ||||||    
T  36067393 tagtcaattaccccc--tccgtttattttggccgttaaatgacta 36067435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 140 - 249
Target Start/End: Complemental strand, 36068220 - 36068113
Alignment:
Q  140 ctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccccccttccgtt 239  Q
    ||||||||||| ||||||||||||| |||||||||||||| |||| |||||||||| ||||||||||| ||||| |||||||||||||||||| ||||||    
T  36068220 ctgaaattgtagctttcgtcaaaaaaccccctgatttttaggaaatttcaaaaaac-cccctgaaattgtcaaatgttagtcaattacccccc-tccgtt 36068123  T
Q  240 tgttttggct 249  Q
    ||||||||||    
T  36068122 tgttttggct 36068113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 115 - 254
Target Start/End: Complemental strand, 32391027 - 32390892
Alignment:
Q  115 tttgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaac 214  Q
    ||||||| ||||||||||||   ||| ||||||||| | |||||||||| |||||||||  |||||||||||||||||| ||||  ||||||||||||||    
T  32391027 tttgagtaaataggcaaaaaaaaccccgaaattgtagcattcgtcaaaa-cccccctgacatttaagaaacttcaaaaatcccc--tgaaattatcaaac 32390931  T
Q  215 gttagtcaattaccccccttccgtttgttttggctgttaa 254  Q
    |||||||||||||||||| ||||||||||||| |||||||    
T  32390930 gttagtcaattacccccc-tccgtttgttttgactgttaa 32390892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 117 - 254
Target Start/End: Complemental strand, 6733273 - 6733140
Alignment:
Q  117 tgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgt 216  Q
    |||||||||||||||||| | | |||||||||||||||||||||||||   |||||||||||||||||||| ||||||   |  ||||||| ||||||||    
T  6733273 tgagtgaataggcaaaaatctctctgaaattgtaactttcgtcaaaaaaaaccctgatttttaagaaacttaaaaaaa--actttgaaattgtcaaacgt 6733176  T
Q  217 tagtcaattaccccccttccgtttgttttggctgttaa 254  Q
    ||| |||||||||||  | ||||| |||||||||||||    
T  6733175 tagccaattaccccc--ttcgtttattttggctgttaa 6733140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 30480808 - 30480689
Alignment:
Q  141 tgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccccccttccgttt 240  Q
    |||||||||||||||||| |||||  ||| |||||||||||| |||||||||||  ||| ||||||| |||||||||||||||||| ||||| |||||||    
T  30480808 tgaaattgtaactttcgtaaaaaattcccttgatttttaagatacttcaaaaaa-tcccttgaaattgtcaaacgttagtcaattatccccc-tccgttt 30480711  T
Q  241 -gttttggctgttaagtgacta 261  Q
     |||||||||||||| ||||||    
T  30480710 ggttttggctgttaaatgacta 30480689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 118 - 245
Target Start/End: Original strand, 6733017 - 6733141
Alignment:
Q  118 gagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgtt 217  Q
    ||||||||||||||||||| || | ||||| |||||||||||||||| |||||||| |||||| ||||||| |||||| ||| ||||||| | |||||||    
T  6733017 gagtgaataggcaaaaacctccataaaattataactttcgtcaaaaa-ccccctgacttttaaaaaacttc-aaaaactcccatgaaattgttaaacgtt 6733114  T
Q  218 agtcaattaccccccttccgtttgtttt 245  Q
    ||||||||| || || ||||||||||||    
T  6733115 agtcaattatcctcc-tccgtttgtttt 6733141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 118 - 253
Target Start/End: Original strand, 24240566 - 24240699
Alignment:
Q  118 gagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgtt 217  Q
    ||||||||| |||||||   || ||||||||||||||| ||||||||||||| ||||||||   || ||||||||||  ||||||||||| | ||| |||    
T  24240566 gagtgaatatgcaaaaaaaaccgtgaaattgtaacttttgtcaaaaacccccttgatttttgcaaagcttcaaaaaa-acccctgaaattgttaaatgtt 24240664  T
Q  218 agtcaattaccccccttccgtttgttttggctgtta 253  Q
    ||||||||||||||| || || ||||||||||||||    
T  24240665 agtcaattacccccc-tctgtctgttttggctgtta 24240699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 135 - 233
Target Start/End: Original strand, 31285487 - 31285584
Alignment:
Q  135 cccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    ||||||||||||||||||||||||||||||||||||||| ||||   |||  || |||||||||||||||||| |||| |||  |||||||||||||||    
T  31285487 cccccctgaaattgtaactttcgtcaaaaacccccctgaattttgcaaaatgtc-aaaaacccccctgaaattgtcaagcgtctgtcaattacccccct 31285584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 31286964 - 31286866
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    |||||||||||||||||||||||||||||||||||||||| ||||   |||  || |||||||||||||| ||| |||| |||  |||||||||||||||    
T  31286964 acccccctgaaattgtaactttcgtcaaaaacccccctgaattttgcaaaatgtc-aaaaacccccctgatattgtcaagcgtctgtcaattacccccct 31286866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 112 - 233
Target Start/End: Complemental strand, 35394832 - 35394712
Alignment:
Q  112 atttttgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatca 211  Q
    |||||||||| ||||| |||  |||| ||||||||||||||||||||||||||||||||||| ||||   |||  || |||||||||| ||||||| |||    
T  35394832 atttttgagtaaatagtcaattaccctcctgaaattgtaactttcgtcaaaaacccccctgaattttgcaaaatgtc-aaaaacccccatgaaattgtca 35394734  T
Q  212 aacgttagtcaattacccccct 233  Q
    | | |  |||||||||||||||    
T  35394733 agcatctgtcaattacccccct 35394712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 118 - 254
Target Start/End: Original strand, 41589186 - 41589315
Alignment:
Q  118 gagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgtt 217  Q
    ||||||||||| ||||  ||||||||||||||||||| || |||||||  || | | ||| |||||| |||||||||  ||  |  ||||||||||||||    
T  41589186 gagtgaataggtaaaa--ccccctgaaattgtaacttccgccaaaaacttcc-taactttaaagaaatttcaaaaaaaacc--tagaattatcaaacgtt 41589280  T
Q  218 agtcaattaccccccttccgtttgttttggctgttaa 254  Q
    ||||||||||||||  || ||||||||||||||||||    
T  41589281 agtcaattaccccc--tctgtttgttttggctgttaa 41589315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 117 - 233
Target Start/End: Complemental strand, 29721195 - 29721083
Alignment:
Q  117 tgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgt 216  Q
    ||||| ||||| |||  |||||| |||||||||||||||| |||||||| ||||||| ||||   |||| |||||||   ||||||||||| |||| |||    
T  29721195 tgagtaaatagtcaattacccccttgaaattgtaactttcttcaaaaac-cccctgaattttgcaaaacgtcaaaaa---cccctgaaattgtcaagcgt 29721100  T
Q  217 tagtcaattacccccct 233  Q
    | |||||||||||||||    
T  29721099 ttgtcaattacccccct 29721083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 34894211 - 34894307
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccccc 231  Q
    |||||| |||||||||| |||||||||||||  | ||||| ||||   |||||||||||||  ||||||||||| |||||||| |||||| |||||||    
T  34894211 acccccttgaaattgtagctttcgtcaaaaattctcctgaattttgcaaaacttcaaaaaa-acccctgaaattgtcaaacgtcagtcaaataccccc 34894307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 260
Target Start/End: Original strand, 3986569 - 3986667
Alignment:
Q  158 tcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccccccttccgtttgttttggctgttaagtg 257  Q
    |||||||||||| | |||||||||||| ||||||||| ||| || ||||| | ||| |||| |||||||||||   |||||||||||||| |||||| ||    
T  3986569 tcaaaaacccccttaatttttaagaaatttcaaaaaa-ccctctaaaattgtaaaatgttaatcaattacccc---tccgtttgttttggttgttaaatg 3986664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 35393179 - 35393277
Alignment:
Q  134 acccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattacccccct 233  Q
    |||| ||||||||||||||||||||||||||  ||||||| ||||   |||  |||||||| |||||||||||| |||| |||  |||||||| ||||||    
T  35393179 accctcctgaaattgtaactttcgtcaaaaattcccctgaattttgcaaaatgtcaaaaaa-ccccctgaaattgtcaagcgtctgtcaattatccccct 35393277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 26157289 - 26157360
Alignment:
Q  135 cccccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaatt 207  Q
    ||||||||||||||||| ||| ||||||||||||| ||| ||||   |||| || ||||||||||||||||||    
T  26157289 cccccctgaaattgtaatttttgtcaaaaacccccttgaattttgcaaaacgtc-aaaaacccccctgaaatt 26157360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 29417150 - 29417206
Alignment:
Q  117 tgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctga 173  Q
    ||||| |||||||||  |||||||||||||||||| |||||||||  ||||||||||    
T  29417150 tgagtaaataggcaattacccccctgaaattgtaagtttcgtcaattacccccctga 29417206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 21125750 - 21125695
Alignment:
Q  118 gagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctga 173  Q
    |||| |||||||||  |||||||||||||||||| |||||||||  ||||||||||    
T  21125750 gagtaaataggcaattacccccctgaaattgtaagtttcgtcaattacccccctga 21125695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 36067544 - 36067581
Alignment:
Q  356 aacaacaacatcatgatcaacatcacacactttctaat 393  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  36067544 aacaacaacatcatcttcaacatcacacactttctaat 36067581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 167 - 253
Target Start/End: Original strand, 1997 - 2080
Alignment:
Q  167 cccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccccccttccgtttgttttggctgtta 253  Q
    ||||||||||||   ||||||||||||  |||||||||||| | |||||||||||||||||||||| ||||| ||||||||||||||    
T  1997 cccctgatttttgcaaaacttcaaaaa--ccccctgaaattgttaaacgttagtcaattacccccc-tccgtctgttttggctgtta 2080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 118 - 254
Target Start/End: Original strand, 26683 - 26817
Alignment:
Q  118 gagtgaataggcaaaaaccccc-ctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaaacccccctgaaattatcaaacgt 216  Q
    ||||||||||| |||| ||||| |||||||||||||||||||||||||  ||    | |||||||||||||| ||||| |  ||||||||| ||||||||    
T  26683 gagtgaataggtaaaatccccctctgaaattgtaactttcgtcaaaaagtccgacaacttttaagaaacttc-aaaaatcttcctgaaattgtcaaacgt 26781  T
Q  217 tagtcaattaccccccttccgtttgttttggctgttaa 254  Q
    ||| ||| ||  || | ||||||| |||||||||||||    
T  26782 tagacaacta--ccacatccgtttattttggctgttaa 26817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 176 - 254
Target Start/End: Complemental strand, 27477 - 27404
Alignment:
Q  176 tttaagaaacttcaaaaaacccccctgaaattatcaaacgttagtcaattaccccccttccgtttgttttggctgttaa 254  Q
    |||||||||||| |||||   || || ||||| ||||||| |||||||||||||||  |||||||||||||||||||||    
T  27477 tttaagaaacttaaaaaa---cctctcaaattgtcaaacgatagtcaattaccccc--tccgtttgttttggctgttaa 27404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 35132 - 35077
Alignment:
Q  118 gagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctga 173  Q
    |||| |||||||||| |||||||||||||||||| | |||||||  ||||||||||    
T  35132 gagtaaataggcaaatacccccctgaaattgtaagtgtcgtcaattacccccctga 35077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 43501 - 43446
Alignment:
Q  118 gagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctga 173  Q
    |||| |||||||||  |||||||||||||||||| |||||||||  ||||||||||    
T  43501 gagtaaataggcaattacccccctgaaattgtaagtttcgtcaattacccccctga 43446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 159
Target Start/End: Complemental strand, 7698 - 7662
Alignment:
Q  122 gaataggcaaaaacccccctgaaattgtaactttcgtc 159  Q
    |||||||||||||||||| |||||||||||||||||||    
T  7698 gaataggcaaaaaccccc-tgaaattgtaactttcgtc 7662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 239157 - 239217
Alignment:
Q  113 tttttgagtgaataggcaaaaacccccctgaaattgtaactttcgtcaaaaacccccctga 173  Q
    ||||||||| |||||||||  ||| |||||||||||||| |||||| ||  ||||||||||    
T  239157 tttttgagtaaataggcaattacctccctgaaattgtaagtttcgttaattacccccctga 239217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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