View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1638_low_9 (Length: 303)
Name: NF1638_low_9
Description: NF1638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1638_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 26327807 - 26327517
Alignment:
| Q |
1 |
ccaacacacttaatcagacacaatgtagacacacac-----tactgctgctgctacagctgctccggcggcaagaagttggcgacataattcaacgcagt |
95 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26327807 |
ccaacacacttaatcagacacaatgtagacacacacactactgctgctgctgctgcagctgctccggcggcaagaagttggcgacataattcaacgcagt |
26327708 |
T |
|
| Q |
96 |
tggtgtgtgtccacgacaatcggcaatcatttcttgtttaatctttttaatttcctcttcagtccttttccttgtcgccggatcttgcctgtccaattga |
195 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26327707 |
tggtctgtgtccacgacaatcggcaatcatttcttgttcaatctttttaatttcctcttcagtccttttccttgtcgccggatcttgcctgtccaattga |
26327608 |
T |
|
| Q |
196 |
ttttgaagtattgctatttgcctcaaaagacatttcacctatacataattttaagacacaaatcaaattagcaaaacggaaatattcattag |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
26327607 |
ttttgaagtattgctatttgcctcaaaagacatttcacctatacataattttaagacacaaatcaaattagcaaaatgg-aatattcattag |
26327517 |
T |
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