View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1639-INSERTION-1 (Length: 681)
Name: NF1639-INSERTION-1
Description: NF1639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1639-INSERTION-1 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 10 - 404
Target Start/End: Complemental strand, 34359144 - 34358750
Alignment:
| Q |
10 |
aagtggttataaaaaatatttcaatcatggagggattcaaatattatatttcactatctcagtgttaatagatattttaatctatcttttactgtactgc |
109 |
Q |
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| T |
34359144 |
aagtggttataaaaaatatttcaatcatggagggattcaaatattatatttcactatctcagtgttaatagatattttaatctatcttttactgtactgc |
34359045 |
T |
|
| Q |
110 |
aatcatggagtaatattaaaataaacaaacacaatcaaccatgatcttgtgcatttcgtgcttgtaccttatcttcttttaacaatgttatgtgatctga |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34359044 |
aatcatggagtaatattaaaataaacaaacacaatcaaccatgatcttgtgcatttcgtgcgtgtaccttatcttcttttaacaatgttatgtgatctga |
34358945 |
T |
|
| Q |
210 |
gaattctcaacaaacaacaacggcttcttcctccttagtcaagtctttgacttgtgctttgcgtgctggccgtatcagccactgtttcagctccaccagg |
309 |
Q |
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| T |
34358944 |
gaattctcaacaaacaacaatggcttcttcctccttagtcaagtctttgacttgtgctttgcgtgctggccgtatcagccactgtttcagctccaccagg |
34358845 |
T |
|
| Q |
310 |
atcttttcgtcttccactgtttatgtcgaatcccaaactagcaacgatgttctcaatattgccgatgatattacacaggtcggtttcacacacta |
404 |
Q |
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| T |
34358844 |
atcttttcgtcttccactgtttatgtcgaatcccaaactagcaacgatgttctcaatattgccgatgatattacacaggtcggtttcacacacta |
34358750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 8 - 400
Target Start/End: Complemental strand, 34353521 - 34353129
Alignment:
| Q |
8 |
acaagtggttataaaaaatatttcaatcatggagggattcaaatattatatttcactatctcagtgttaatagatattttaatctatcttttactgtact |
107 |
Q |
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| T |
34353521 |
acaagtggttataaaaaatatttcaatcatggaggtattcaaatattatatttcactgtttcagtgctaattattattttaatctatcttttactatatt |
34353422 |
T |
|
| Q |
108 |
gcaatcatggagtaatattaaaataaacaaacacaatcaaccatgatcttgtgcatttcgtgcttgtaccttatcttcttttaacaatgttatgtgatct |
207 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||| ||| |||||||||||||||||||| ||||||||||||||| |
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| T |
34353421 |
tcaatcatggtgtaatattaaaataaacaaacacaatcaaccacgatcttgtgtatttcttgcgtgtaccttatcttcttttaataatgttatgtgatct |
34353322 |
T |
|
| Q |
208 |
gagaattctcaacaaacaacaacggcttcttcctccttagtcaagtctttgacttgtgctttgcgtgctggccgtatcagccactgtttcagctccacca |
307 |
Q |
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| T |
34353321 |
gagaattctcaacaagcgacaatggtttcttcctccttagtgaagtctttgtcttgtgcttttcgtgcctgccgtatcagccactctttcagctccacca |
34353222 |
T |
|
| Q |
308 |
ggatcttttcgtcttccactgtttatgtcgaatcccaaactagcaacgatgttctcaatattgccgatgatattacacaggtcggtttcacac |
400 |
Q |
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| T |
34353221 |
ggatcttttcgtcttccattgtctctgtcgaatcccaaactagcaacgatgatctcaatattgccgatgatattacacaggtcggtttcacac |
34353129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 435 - 670
Target Start/End: Complemental strand, 34358724 - 34358489
Alignment:
| Q |
435 |
gtagcatgcaattcggcgatgaatctccannnnnnnngctgcttgcatggcacagctcatargaaaaacgccaatggtttacctgaagagtatcactaag |
534 |
Q |
| |
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|||||||||||||||| |||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34358724 |
gtagcatgcaattcggtgatgaatctccattttttttgctgcttgcatggcacaactcataggaaaaacgccaatggtttacctgaagagtatcactaag |
34358625 |
T |
|
| Q |
535 |
ggctcagttgctaacattgctgcaaagcttgaggttatgganccttgttgtantgncaaanacaggtaaatgtgtgtgtatgacaacattaatcgttctc |
634 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
34358624 |
ggctcagttgctaacattgctgcaaagcttgaggttatggagccttgttgtagtgtcaaagacaggtagatgtgtgtgtatgacaacattaatcgttctc |
34358525 |
T |
|
| Q |
635 |
ttcttcc-ttttaaacattttgggttcctttatcttg |
670 |
Q |
| |
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||||||| ||||||||||||| |||||| |||||||| |
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| T |
34358524 |
ttcttcctttttaaacatttt-ggttccattatcttg |
34358489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 480 - 670
Target Start/End: Complemental strand, 34353040 - 34352854
Alignment:
| Q |
480 |
catggcacagctcatargaaaaacgccaatggtttacctgaagagtatcactaagggctcagttgctaacattgctgcaaagcttgaggttatggancct |
579 |
Q |
| |
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||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| || |
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| T |
34353040 |
catggtacagctcataggaaaaacgccaatggtttacctgaagagtatcactaagggctcagttgctaatattgctgctaagcttgagcttatggagcca |
34352941 |
T |
|
| Q |
580 |
tgttgtantgncaaanacaggtaaatgtgtgtgtatgacaacattaatcgttctcttcttcc-ttttaaacattttgggttcctttatcttg |
670 |
Q |
| |
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||||||| || |||| ||||||| |||||| ||||| ||||| | ||||||||||||| ||||||||||||| |||| |||||||||| |
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| T |
34352940 |
tgttgtagtgtcaaagacaggta----ggtgtgtgtgacagcattagttgttctcttcttcctttttaaacatttt-ggtttctttatcttg |
34352854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 487 - 604
Target Start/End: Complemental strand, 34369126 - 34369009
Alignment:
| Q |
487 |
cagctcatargaaaaacgccaatggtttacctgaagagtatcactaagggctcagttgctaacattgctgcaaagcttgaggttatgganccttgttgta |
586 |
Q |
| |
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||||||||| ||||||| ||||||||||| ||||| || ||| | ||||| || |||||||| |||||||| ||||||||| ||||||| |||||||||| |
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| T |
34369126 |
cagctcataggaaaaacaccaatggtttatctgaatagcatcgcaaagggttccgttgctaatattgctgctaagcttgagattatggagccttgttgta |
34369027 |
T |
|
| Q |
587 |
ntgncaaanacaggtaaa |
604 |
Q |
| |
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|| |||| ||||||||| |
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| T |
34369026 |
gtgtcaaagacaggtaaa |
34369009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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