View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1639-INSERTION-2 (Length: 698)
Name: NF1639-INSERTION-2
Description: NF1639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1639-INSERTION-2 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 8 - 469
Target Start/End: Complemental strand, 3676064 - 3675616
Alignment:
| Q |
8 |
aagagagcctctttgggattgagaggtgttactctatttttctctttgacttccttcctcctcatggcaagtaacaaacatggttattggaaaaactttg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
3676064 |
aagagagcctctttgggattgagaggtgttactctatttttctctttgacttccttcctcctcatggcaagtaacaaacatggttatggggaaaactttg |
3675965 |
T |
|
| Q |
108 |
accactatcaagaatacaggtnnnnnnntatgaagtttaatttttatatatcgtcaatgtacaaatattctacgcatgatatacttatagggttgccaca |
207 |
Q |
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| T |
3675964 |
accactatcaagaatacaggtaaaaaa-tatgaagtttaatttttatatatcgtcaatgtacaaatattctacacatgatatactt--------gccaca |
3675874 |
T |
|
| Q |
208 |
tcatttaatgaattaaaaacacatgacttgtaaagcttttatgtattcgcgatgaacaaaattttgattttgagaaataacattgcgactattaacaata |
307 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
3675873 |
tcatttaatgaattaaaaacacatgatttgtaaagcttttgtgtattcgcgatgaacaaaattttgattttaagaaataacattgcaactattaacaata |
3675774 |
T |
|
| Q |
308 |
taatgcaactatcacaacaattatcactactannnnnnnnnnnnngtcgaaataatagaaaaattagagagnnnnnnnnntgaaattcattgtcatattt |
407 |
Q |
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| T |
3675773 |
taatgcaactatcacaacaattatcactacta---ttttttttttgttgaaataatagaaaaattagagag-aaaaaaaatgaaattcattgtcatattt |
3675678 |
T |
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| Q |
408 |
ggcgcctgtaatacttaacaacatatctaacgatatccttnnnnnnncatatttaacgataa |
469 |
Q |
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| T |
3675677 |
ggcgcctgtaatacttaacaacatatctaacaatatccttaaaaaaacatatttaacgataa |
3675616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 538 - 698
Target Start/End: Complemental strand, 3675548 - 3675386
Alignment:
| Q |
538 |
gtcgtgaaatgtgatatgatggggttttgtcaaa-tttaatttgtatggaactttaattaataannnnnnnaatcttaggtatttgcttgtggtagcatt |
636 |
Q |
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||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3675548 |
gtcgtgaaatgtgatatgatgggtttttgtcaaaatttaatttgtatggaactttaattaataatttttttaatcttaggtatttgcttgtggtagcatt |
3675449 |
T |
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| Q |
637 |
ttttacaagtatatacacaggaagccaagtgtatcgtc-aattcatgaacttatcactgggaa |
698 |
Q |
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| T |
3675448 |
ttttacaagtatatacacaggaagccaagtgtatcgtcaaattcatgaacttatcactgggaa |
3675386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 4743696 - 4743592
Alignment:
| Q |
8 |
aagagagcctctttgggattgagaggtgtt-actctatttttctctttgacttccttcctcctcatggcaagtaacaaacatggttattggaaaaacttt |
106 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||| ||||||||||||| |||||||||||| |||| ||| |
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| T |
4743696 |
aagagagcctctttgggattgagaggtgtttactctatttttctctt-gacttctttcctcctcgtggcaagtaacaaccatggttattgggaaaatttt |
4743598 |
T |
|
| Q |
107 |
gaccac |
112 |
Q |
| |
|
|||||| |
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|
| T |
4743597 |
gaccac |
4743592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 4750457 - 4750400
Alignment:
| Q |
8 |
aagagagcctctttgggattgagaggtgttactctatttttctctttgacttccttcc |
65 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4750457 |
aagagagcctctttggaattgagaggtgttactctatttttctctttgacttccttcc |
4750400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 8279560 - 8279526
Alignment:
| Q |
204 |
cacatcatttaatgaattaaaaacacatgacttgt |
238 |
Q |
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| T |
8279560 |
cacatcatttaatgagttaaaaacacatgacttgt |
8279526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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