View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1639-INSERTION-6 (Length: 570)

Name: NF1639-INSERTION-6
Description: NF1639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1639-INSERTION-6
NF1639-INSERTION-6
[»] chr8 (2 HSPs)
chr8 (8-570)||(551417-551980)
chr8 (485-570)||(23421856-23421943)


Alignment Details
Target: chr8 (Bit Score: 485; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 8 - 570
Target Start/End: Complemental strand, 551980 - 551417
Alignment:
Q  8 ctactttccgtttctcactcactcacttcttttnnnnnnnnncctaagccttgaacgttgtagcaaaaaggtagtttctgttgttgctgattattttgct 107  Q
    |||||||||||||||||||||||||||||||||         |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  551980 ctactttccgtttctcactcactcacttcttttaaaaaaac-cctaggccttgaacgttgtagcaaaaaggtagtttctgttgttgctgattattttgct 551882  T
Q  108 gcagaaacactttctgtagctaaagagttcaacattttgtcctacatatattaccctggaaatgctttatcaatttcattgttcttccatttaccttacc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  551881 gcagaaacactttctgtagctaaagagttcaacattttgtcctacatatattaccctggaaatgctttatcaatttcattgttcttccatttaccttacc 551782  T
Q  208 ttgataaaactacatcatgtgagttcaaggatttaaaagaagcaatcaaaatgcctggttgcataccaattcatggttgtgattttccaagcacagttca 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  551781 ttgataaaactacatcatgtgagttcaaggatttaaaagaagcaatcaaaatgcctggttgcagaccaattcatggttgtgattttccaagcacagttca 551682  T
Q  308 aaaccgttcgagcattgtgtataaatcattcacttatgcatgcaaaatgttgcattttgcagatggaataatactaaatgcttttacaaatttagaagca 407  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  551681 aaaccgttcgagcattgtgtataaatcattcatttatgtatgcaaaatgttgcattttgcagatggaataatactaaatgcttttacaaatttagaagca 551582  T
Q  408 gatacaatcaaggctatgcagaaaaaagaagctaagcttcctccaatctaccttattggacccatcattcaaactgattcaagcattaa-gtaagggaat 506  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  551581 gatacaatcaaggctgtgcagaaaaaagaagctaagcttccttcaatctaccttattggacccatcattcaaactgattcaagcattaaggtaagggaat 551482  T
Q  507 cagaa-ttttgatgggttggttagataatcaaccatgtaactcagttctttatgtttcatttggg 570  Q
    ||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  551481 cagaattttttatgggttggttagataatcaaccatgtaactctgttctttatgtttcatttggg 551417  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 485 - 570
Target Start/End: Original strand, 23421856 - 23421943
Alignment:
Q  485 ttcaagcattaag-taagggaatcagaattttg-atgggttggttagataatcaaccatgtaactcagttctttatgtttcatttggg 570  Q
    ||||| ||||||| ||| ||||||||||||||  ||||||||||| ||||||||| ||||||| || |||||||||||||||||||||    
T  23421856 ttcaaccattaaggtaaaggaatcagaattttttatgggttggttggataatcaatcatgtaaatctgttctttatgtttcatttggg 23421943  T

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