View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16390_high_1 (Length: 463)
Name: NF16390_high_1
Description: NF16390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16390_high_1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 4e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 231 - 463
Target Start/End: Original strand, 38390624 - 38390877
Alignment:
| Q |
231 |
cttgaactaatgggtttgagtttaacggaaagagttatactcgcacaacccaaccaataaatgtttgaactccgacatagaacgatactcatatttaatg |
330 |
Q |
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| T |
38390624 |
cttgaactaatgggtttgagtttaacggaaagagttatactcgcacaatccgacgaataaatgtttaaattctgacatagagcgatactcatatttagtg |
38390723 |
T |
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| Q |
331 |
tctgata----ttagattaaaattatatatttaatgttgttaatttttatgttctcaatttaaa-----------------aaatacattggaccaacct |
409 |
Q |
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| T |
38390724 |
tctgatatgtcttagattaaaattatatatttaatgttcttaatttttatgttctcaatttaaaatttaatttaagcttacaaatacattggaccaacct |
38390823 |
T |
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| Q |
410 |
taatagaaataatataaaaaatgtttttggtagaatttcttcttactatctaac |
463 |
Q |
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| T |
38390824 |
taatagaaataatataaaaaatgtttttggtagaatttcttcttactatctaac |
38390877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 38390424 - 38390518
Alignment:
| Q |
31 |
aatgaaaggcgttaaaatatcttaattaacgagtaaacttttgtgatagtaaaacacttaaaacgatcacttagcaaacaatcatttaacaattg |
125 |
Q |
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| T |
38390424 |
aatgaaaggcgttaaaatatcttaattaacgagtaaacttttgagatagtaaaacacttaaaacgatcacttagcaaacaatcatttaataattg |
38390518 |
T |
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