View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16390_high_3 (Length: 375)
Name: NF16390_high_3
Description: NF16390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16390_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 21 - 352
Target Start/End: Complemental strand, 7308314 - 7307983
Alignment:
| Q |
21 |
catcatcttagactgtcatcaactaaccaacgcaggcattgctactgctctacatgagagaccaacattgcgctctttatcctttgccaattctaagtct |
120 |
Q |
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| T |
7308314 |
catcatattagactgtcatcaactaaccaacgcaggcattgctactgctctacatgagagaccaacattgcgctctttatcctttgccaattctaagtct |
7308215 |
T |
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| Q |
121 |
ttggtggattttggtgtaagccctcaactggagtctctccatttggttcacagttggtggaaaagcaatgacaccatcaaaagggttccatggttattcc |
220 |
Q |
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| T |
7308214 |
ttggtggattttggtgtaagccctcaactggagtctctccatttggttcacagttggtggaaaagcaatgacaccatcaaaagggttccatggttattcc |
7308115 |
T |
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| Q |
221 |
ccaatttgcagcggcttgatttgagccggcgcagagtcaattctggaaatgaatttgtttttgatgggactgaagaaggtatttgtaaccttttgagaaa |
320 |
Q |
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| T |
7308114 |
ccaatttgcagcggcttgatttgagccgacgcagagtcaattctggaaatgaatttgtttttgatgggactgaagaaggtatttgtaaccttttgagaaa |
7308015 |
T |
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| Q |
321 |
ttgtagtaagattaaacatttgaacttaaccc |
352 |
Q |
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| T |
7308014 |
ttgtagtaagattaaacatttgaacttaaccc |
7307983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 547252 - 547195
Alignment:
| Q |
109 |
aattctaagtctttggtggattttggtgtaagccctcaactggagtctctccatttgg |
166 |
Q |
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| T |
547252 |
aattctaattctttcaaggattttgttgtaagccctcaattgaagtctctccatttgg |
547195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 8183615 - 8183668
Alignment:
| Q |
52 |
gcaggcattgctactgctctacatgagagaccaacattgcgctctttatccttt |
105 |
Q |
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| T |
8183615 |
gcaggcattgcttctgcattacttgagagaccaacattgaggtctttatccttt |
8183668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 245
Target Start/End: Original strand, 8183898 - 8183926
Alignment:
| Q |
217 |
ttccccaatttgcagcggcttgatttgag |
245 |
Q |
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| T |
8183898 |
ttccccaatttgcagcggcttgatttgag |
8183926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 18314944 - 18315014
Alignment:
| Q |
32 |
actgtcatcaactaaccaacgcaggcattgctactgctctacatgagagaccaacattgcgctctttatcc |
102 |
Q |
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| T |
18314944 |
actgtcatcaaataaccaacgcgggtattgcttttgctctccgtgagagaccaactttgaggtctttatcc |
18315014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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