View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16391_high_1 (Length: 749)
Name: NF16391_high_1
Description: NF16391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16391_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 711; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 711; E-Value: 0
Query Start/End: Original strand, 10 - 732
Target Start/End: Complemental strand, 47872206 - 47871484
Alignment:
| Q |
10 |
attattctacatcaatttaagaattgtaagcctctgagggaaaagaaactggatcaaaaattgtgctcattgttgtagtaggataagttgactcaaacat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47872206 |
attattctacatcaatttaagaattgtaagcctctgagggaaaagaaactggatcaaaaattgtgctcattgttgtagtaggataagttgactcaaacat |
47872107 |
T |
|
| Q |
110 |
ctcctccgaaagaattggtaaagaagcttcaaatttaagcacctgaatcacttgtcttacagatggcctacatgaataatttggattggcacaccaaagg |
209 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47872106 |
ctcctctgaaagaattggtaaagaagcttcaaatttaagcacctgaatcacttgtcttacagatggcctacatgaataatttggattggcacaccaaagg |
47872007 |
T |
|
| Q |
210 |
ccaataaccactaaacgttccatttgttcctcatcaaatgcacccccgagttttgtgtctaccacttcaagcaaccttccaagtctataaaggtcccaga |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47872006 |
ccaataaccactaaacgttccatttgttcctcatcaaatgcacccccgagttttgtgtctactacttcaagcaaccttccaagtctataaaggtcccaga |
47871907 |
T |
|
| Q |
310 |
cccgatcaaatatagccacttgaccctccttggccttacgatcaattggttttcttccacttgctaattccaatgaaacaataccaaaactgtatatatc |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47871906 |
cccgatcaaatatagccacttgaccctccttggccttacgatcaattggttttcttccacttgctaattccaatgaaacaataccaaaactgtatatatc |
47871807 |
T |
|
| Q |
410 |
agattcctttgtagctttccctgttgtgaaatattcaggagctatataccccatagtcccagctatgatcgtggtactttgtgatcctttctcatgatcc |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
47871806 |
agattcctttgtagctttccctgttgtgaaatattcaggagctatataccccatagtcccagctatgatcgtggtactttgtgatactttctcatgatcc |
47871707 |
T |
|
| Q |
510 |
accaacctagccaacccaaaatcaccaagctttgcattgaaactatcgtccaacataatgttgctggattttatgtctctatgaatcacacattgttccc |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47871706 |
accaacctagccaacccaaaatcaccaagctttgcattgaaactatcgtccaacataatgttgctggattttatgtctctatgaatcacacattgttccc |
47871607 |
T |
|
| Q |
610 |
attcttcatgaagatacaacaatgccgaagccaaatccatagcaatgttgtacctcacttgccatgtcaatatgctttttccgcgatataggtgagaatc |
709 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47871606 |
attcttcatgaagatacaacaatgccgaagccaaatccatagcaatgttgtacctcacttgccatgtcaatatgctttttccgcgatataggtgagaatc |
47871507 |
T |
|
| Q |
710 |
taagctaccattttgcatgaact |
732 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
47871506 |
taagctaccattttgcatgaact |
47871484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 120 - 732
Target Start/End: Original strand, 47873446 - 47874061
Alignment:
| Q |
120 |
agaattggtaaagaagcttcaaatttaagcacctgaatcacttgtcttacagatggcctacatgaataatttggattggcacaccaaaggccaataacca |
219 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
47873446 |
agaattggtaaaggagcttcaagtttaagcacctgaatcacttgtcttacagatggcctaaatgaataatttggattggcacaccaaagaccaataacca |
47873545 |
T |
|
| Q |
220 |
ctaaacgttccatttgttcctcatcaaatgcacccccgagttttgtgtctaccacttcaagcaaccttccaagtctataaaggtcccagacccgatcaaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||| ||||| |||| |||||| |
|
|
| T |
47873546 |
ctaaacgttccatttgttcctcatcaaatgcacccccgagttttgtgtctactacttcaagcaaccttcctaatctataaagctcccaaacccaatcaaa |
47873645 |
T |
|
| Q |
320 |
tatagccacttgaccctccttggccttacgatcaattggttttcttccacttgctaattccaatgaaacaataccaaaactgtatatatcagattccttt |
419 |
Q |
| |
|
|||||||| |||| |||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||| |
|
|
| T |
47873646 |
tatagccatttgatcctccttggcattaagatcaactggttttcttccacttgctaattccaatgaaacaatgccaaagctgtatatatctgattccttt |
47873745 |
T |
|
| Q |
420 |
gtagctttccctgttgtgaaatattcaggagctatataccccatagtcccagctatgatcgtggt-act--ttgtgatcctttctcatgatccaccaacc |
516 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||| |||||||| |||||||||||||| ||||| || |||||||||||||||||||||||| | || |
|
|
| T |
47873746 |
gtagccttccctgttgtgatatattcaggagctatgtaccccatggtcccagctatgattgtggtgtctgattgtgatcctttctcatgatccacaagcc |
47873845 |
T |
|
| Q |
517 |
tagccaacccaaaatcaccaagctttgcattgaaactatcgtccaacataatgttgctggattttatgtctctatgaatcacacattgttcccattcttc |
616 |
Q |
| |
|
| ||||| || ||||| |||||||| ||||||||| | | ||| ||||| |||||||||||||| | || ||||||| ||||||||||||||||||||| |
|
|
| T |
47873846 |
ttgccaatccgaaatccccaagcttagcattgaaattgttgtctaacatgatgttgctggatttgacatccctatgaagcacacattgttcccattcttc |
47873945 |
T |
|
| Q |
617 |
atgaagatacaacaatgccgaagccaaatccatagcaatgttgtacctcacttgccatgtcaatatgctttttccgcgatataggtgagaatctaagcta |
716 |
Q |
| |
|
|||||| ||||| | ||| |||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||| ||||| ||||||||||||||| |
|
|
| T |
47873946 |
atgaaggtacaaaagtgctgaagccaagtccatagcaatgttgtacctcatttgccatgtcaatacgctttttccgcggtatagatgagaatctaagcta |
47874045 |
T |
|
| Q |
717 |
ccattttgcatgaact |
732 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
47874046 |
ccattttgcatgaact |
47874061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 578 - 625
Target Start/End: Original strand, 22875038 - 22875085
Alignment:
| Q |
578 |
ttttatgtctctatgaatcacacattgttcccattcttcatgaagata |
625 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||| ||||| |
|
|
| T |
22875038 |
ttttatgtctctatgaatcacaactttttcccattcttcatgtagata |
22875085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 46 - 709
Target Start/End: Complemental strand, 5821508 - 5820862
Alignment:
| Q |
46 |
agggaaaagaaactggatcaaaaattgtgctcattgttgtagtaggataagttgactcaaacatctcctccgaaagaattggtaaagaagcttcaaattt |
145 |
Q |
| |
|
||||||||||||| |||| |||||||| ||||||||||| ||||||||||||||| | |||||||| |||| |||||||||| || ||||||||| |
|
|
| T |
5821508 |
agggaaaagaaacaggataaaaaattgagctcattgttgcagtaggataagttgattgaaacatcttt---gaaatcattggtaaaggaggttcaaattt |
5821412 |
T |
|
| Q |
146 |
aagcacctgaatcacttgtcttacagatggcctacatgaataatttggattggcacacca--aaggccaataaccactaaacgttccatttgttcctcat |
243 |
Q |
| |
|
||| | || |||||||||||||||| |||||||| ||||||||||||||||| |||||| ||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
5821411 |
aagaaacttaatcacttgtcttacacatggcctaaatgaataatttggattgatacaccataaagtccaataaccactaaacgttccaattgttcctcat |
5821312 |
T |
|
| Q |
244 |
caaatgcacccccgagttttgtgtctaccacttcaagcaaccttccaagtctataaaggtcccagacccgatcaaatatagccacttgaccctccttggc |
343 |
Q |
| |
|
||||| | ||| |||||| ||| || |||||||||||| |||| |||||||| | |||||| || | |||||||||||| |||||| || ||||| |
|
|
| T |
5821311 |
caaatacgtgcccaagttttctgtatattacttcaagcaactttcctagtctatacaagtcccaaacacaatcaaatatagctacttgattatctttggc |
5821212 |
T |
|
| Q |
344 |
cttacgatcaattggttttcttccacttgctaattccaatgaaacaataccaaaa--ctgtatatatcagattcctttgtagctttccctgttgtgaaat |
441 |
Q |
| |
|
|||||||||| ||||||| ||||||||| | |||| ||| ||||||| | |||| |||||||||||| |||||||||||||||||| ||||||||| | |
|
|
| T |
5821211 |
cttacgatcagttggtttccttccacttaccaattttaataaaacaattcaaaaaaactgtatatatcatattcctttgtagctttccttgttgtgaagt |
5821112 |
T |
|
| Q |
442 |
attcaggagctatataccccatagtcccagctatgatcgtggtactttgtgatcctttctcatgatccaccaacctagccaacccaaaatcaccaagctt |
541 |
Q |
| |
|
|||||||||||||||| |||||||||||| || || | |||||||||||||||||||||||||||||| |||||||||| | ||||||||||| || |
|
|
| T |
5821111 |
--tcaggagctatataccacatagtcccagcaataattttagtactttgtgatcctttctcatgatccacc-acctagccaatctgaaatcaccaagttt |
5821015 |
T |
|
| Q |
542 |
tgcattgaaactatcgtccaacataatgttgctggattttatgtctctatgaatcacacattgttcccattcttcatgaagatacaacaatgccgaagcc |
641 |
Q |
| |
|
|||||||| ||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
5821014 |
aacattgaaaatatagtccaacataatgttattggattttatgt------------cacattgttcccattcttcatgaaggtacaacaatgc---tgcc |
5820930 |
T |
|
| Q |
642 |
aaatccatagcaatgttgtacctcacttgccatgtcaatatgctttttccgcgatataggtgagaatc |
709 |
Q |
| |
|
||||||||| |||||||||| |||| ||| ||||||||||| ||||||| |||||| |||||||||| |
|
|
| T |
5820929 |
aaatccataacaatgttgtagctcatatgcaatgtcaatatgatttttccacgatattggtgagaatc |
5820862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 363 - 732
Target Start/End: Complemental strand, 36931579 - 36931213
Alignment:
| Q |
363 |
cttccacttgctaattccaatgaaacaataccaaaactgtatatatcagattcctttgtagctttccctgttgtgaaatattcaggagctatatacccca |
462 |
Q |
| |
|
|||||||| |||| ||||||| | || | ||||| ||| |||||||||||||||| |||| || |||| ||||||||||||||| || ||||| ||| |
|
|
| T |
36931579 |
cttccactggctatttccaataacactactccaaagctgaatatatcagattccttggtaggctttcctgatgtgaaatattcaggtgcaatataacccc |
36931480 |
T |
|
| Q |
463 |
tagtcccagctatgatcgtggtactttgtgatcctttctcatgatccaccaacctagccaacccaaaatcaccaagctttgcattgaaactatcgtccaa |
562 |
Q |
| |
|
| ||||||||||| || ||||| |||||| || |||||||||| || | |||||| || ||||||||||||||| |||||||||| ||||| |
|
|
| T |
36931479 |
ttgtcccagctataattgtggt---ttgtgaccccgtctcatgatctacaagcctagctaaaccaaaatcaccaagccgagcattgaaacatgaatccaa |
36931383 |
T |
|
| Q |
563 |
cataatgttgctggattttatgtctctatgaatcacacattgttcccattcttcatgaagatacaacaatgccgaagccaaatccatagcaatgttgtac |
662 |
Q |
| |
|
||||||||| |||||||| ||||| || |||| |||||| |||||||||||||| || || || | |||||| |||||||| ||| || || || ||| |
|
|
| T |
36931382 |
cataatgttactggatttaatgtccctgtgaagcacacactgttcccattcttcctgtaggtaaagcaatgctgaagccaagcccaatgctatattatac |
36931283 |
T |
|
| Q |
663 |
ctcacttgccatgtcaatatgctttttccgcgatataggtgagaatctaagctaccattttgcatgaact |
732 |
Q |
| |
|
|||| | ||||||||||| ||| ||| | ||||| |||||||||||||| |||||| |||||||| |
|
|
| T |
36931282 |
ctcattgtccatgtcaataagctctttttactgtatagatgagaatctaagcttccatttgacatgaact |
36931213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 138 - 250
Target Start/End: Complemental strand, 36931804 - 36931692
Alignment:
| Q |
138 |
tcaaatttaagcacctgaatcacttgtcttacagatggcctacatgaataatttggattggcacaccaaaggccaataaccactaaacgttccatttgtt |
237 |
Q |
| |
|
|||||||| || ||||||||||||||||||| ||| ||||| ||||||||| ||||| ||||||||||||||| || ||| |||||||||| ||||| |
|
|
| T |
36931804 |
tcaaatttgagaacctgaatcacttgtcttatagaaggcctgaatgaataatctggatgaacacaccaaaggccaacaatcaccaaacgttccagttgtt |
36931705 |
T |
|
| Q |
238 |
cctcatcaaatgc |
250 |
Q |
| |
|
|||||||||||| |
|
|
| T |
36931704 |
gctcatcaaatgc |
36931692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 495 - 643
Target Start/End: Complemental strand, 36934598 - 36934450
Alignment:
| Q |
495 |
cctttctcatgatccaccaacctagccaacccaaaatcaccaagctttgcattgaaactatcgtccaacataatgttgctggattttatgtctctatgaa |
594 |
Q |
| |
|
|||||||||||||||| ||||||||| | |||||||| || ||||| | |||||| ||||||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
36934598 |
cctttctcatgatccatcaacctagctagaccaaaatcccctagcttagtattgaagtcggagtccaacattatgttgcttgattttatgtccctatgaa |
36934499 |
T |
|
| Q |
595 |
tcacacattgttcccattcttcatgaagatacaacaatgccgaagccaa |
643 |
Q |
| |
|
||||||||| |||||||||||| || | ||| | ||||||||| ||||| |
|
|
| T |
36934498 |
tcacacatttttcccattcttcctgcaaataaagcaatgccgaggccaa |
36934450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 516 - 644
Target Start/End: Complemental strand, 36949622 - 36949494
Alignment:
| Q |
516 |
ctagccaacccaaaatcaccaagctttgcattgaaactatcgtccaacataatgttgctggattttatgtctctatgaatcacacattgttcccattctt |
615 |
Q |
| |
|
||||||| ||| ||||| |||||||||| ||||||| || |||||||||| ||||| ||||||||||||||||| | |||||| || || || |||| |
|
|
| T |
36949622 |
ctagccagcccgaaatctccaagctttgtattgaaattagaatccaacataacattgcttgattttatgtctctatgtagcacacaatgctcacactctt |
36949523 |
T |
|
| Q |
616 |
catgaagatacaacaatgccgaagccaaa |
644 |
Q |
| |
|
|||| || ||||| |||||||| |||||| |
|
|
| T |
36949522 |
catgcaggtacaataatgccgaggccaaa |
36949494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 516 - 644
Target Start/End: Complemental strand, 36959756 - 36959628
Alignment:
| Q |
516 |
ctagccaacccaaaatcaccaagctttgcattgaaactatcgtccaacataatgttgctggattttatgtctctatgaatcacacattgttcccattctt |
615 |
Q |
| |
|
||||||| ||| ||||| |||||||||| ||||||| || |||||||||| ||||| ||||||||||||||||| | |||||| || || || |||| |
|
|
| T |
36959756 |
ctagccagcccgaaatctccaagctttgtattgaaattagaatccaacataacattgcttgattttatgtctctatgtagcacacaatgctcacactctt |
36959657 |
T |
|
| Q |
616 |
catgaagatacaacaatgccgaagccaaa |
644 |
Q |
| |
|
|||| || ||||| |||||||| |||||| |
|
|
| T |
36959656 |
catgcaggtacaataatgccgaggccaaa |
36959628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 558 - 643
Target Start/End: Complemental strand, 36939351 - 36939266
Alignment:
| Q |
558 |
tccaacataatgttgctggattttatgtctctatgaatcacacattgttcccattcttcatgaagatacaacaatgccgaagccaa |
643 |
Q |
| |
|
|||||||| ||||| || | ||||||||||||||| | ||||||||||||||||||||||| | ||| |||| ||| |||||||| |
|
|
| T |
36939351 |
tccaacatgatgttacttgcttttatgtctctatgtacaacacattgttcccattcttcatgcaaatataacagtgcagaagccaa |
36939266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 558 - 643
Target Start/End: Original strand, 36941767 - 36941852
Alignment:
| Q |
558 |
tccaacataatgttgctggattttatgtctctatgaatcacacattgttcccattcttcatgaagatacaacaatgccgaagccaa |
643 |
Q |
| |
|
|||||||| ||||| || | ||||||||||||||| | ||||||||||||||||||||||| | ||||||||||| || ||||| |
|
|
| T |
36941767 |
tccaacatgatgttacttgcttttatgtctctatgtacaacacattgttcccattcttcatgcaagtacaacaatgcagatgccaa |
36941852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 517 - 619
Target Start/End: Complemental strand, 28279325 - 28279223
Alignment:
| Q |
517 |
tagccaacccaaaatcaccaagctttgcattgaaactatcgtccaacataatgttgctggattttatgtctctatgaatcacacattgttcccattcttc |
616 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| || ||||||| || || ||||| || || ||||| | |||||||| |||||||||||| |
|
|
| T |
28279325 |
tagccaacccaaaatcaccaagcttgacattgaaactagaatctaacataacattacttgatttaatatccctatgtaccacacatttttcccattcttc |
28279226 |
T |
|
| Q |
617 |
atg |
619 |
Q |
| |
|
||| |
|
|
| T |
28279225 |
atg |
28279223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 517 - 625
Target Start/End: Original strand, 28294361 - 28294469
Alignment:
| Q |
517 |
tagccaacccaaaatcaccaagctttgcattgaaactatcgtccaacataatgttgctggattttatgtctctatgaatcacacattgttcccattcttc |
616 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||| ||||||| || || ||||| || || ||||||| |||||| ||||||||||| |
|
|
| T |
28294361 |
tagccaacccaaaatcaccaagcttgacattgaaacttgagtctaacataacattacttgatttaatatccctatgaaccacacacctctcccattcttc |
28294460 |
T |
|
| Q |
617 |
atgaagata |
625 |
Q |
| |
|
||| ||||| |
|
|
| T |
28294461 |
atgtagata |
28294469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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