View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16391_high_16 (Length: 242)
Name: NF16391_high_16
Description: NF16391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16391_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 32777440 - 32777237
Alignment:
| Q |
16 |
attatacttcggtaattttatcaagagaatgtatggaaccacatccaaccactctaaacgcgtatacatgagttttcaccgtgatttttagaagctaggg |
115 |
Q |
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| T |
32777440 |
attatacttcgataattttatcaagagaatgtttggaaccacgtccaacaactccaaacatgtatacatgagttttcaccgtgatttttaaaagctagaa |
32777341 |
T |
|
| Q |
116 |
tttagatttacaatacagttgagcgttagttgtagatcattagatt--aagttataaatgtatctctcctagtctaacgatttacaaccaactgtaccaa |
213 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32777340 |
tttagatttacaatacagttgagcgttagtcgtagatcattagattaaaagttataaatgtatctctcctagtctaacgatttacaaccaactgtaccaa |
32777241 |
T |
|
| Q |
214 |
agtt |
217 |
Q |
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|||| |
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| T |
32777240 |
agtt |
32777237 |
T |
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