View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16391_high_17 (Length: 240)
Name: NF16391_high_17
Description: NF16391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16391_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 7095817 - 7095994
Alignment:
| Q |
19 |
aatgatcatctggcccatatggttgacataaatcaatgttcttcaaaaatgt-acaaataacttttgttcttcgttacttcaaacttgttctccaaggga |
117 |
Q |
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| T |
7095817 |
aatgatcatctggcccatatggttgacataaatcaatgttcttcaaaaatgtcacaaataacttttgttcttcgtgacttcaaacttgttctccaaggga |
7095916 |
T |
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| Q |
118 |
taaatgccctcctagtcaatatcacaaataacattatgaaaagaaaaccaagttacacgcatgttctatgatgttgtg |
195 |
Q |
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| T |
7095917 |
taaatgccctcctagtcaatatcacaaataacattatgaaaagaaaaccaagttacacgcatgttctatgatgttgtg |
7095994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 105 - 191
Target Start/End: Complemental strand, 7585191 - 7585105
Alignment:
| Q |
105 |
gttctccaagggataaatgccctcctagtcaatatcacaaataacattatgaaaagaaaaccaagttacacgcatgttctatgatgt |
191 |
Q |
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| T |
7585191 |
gttcttcaagggataagtgccctcctagtcaatgtcacaaattacattaggaaaagaaaaccaagttacatgcatgttcaatgatgt |
7585105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 112 - 195
Target Start/End: Complemental strand, 9624657 - 9624574
Alignment:
| Q |
112 |
aagggataaatgccctcctagtcaatatcacaaataacattatgaaaagaaaaccaagttacacgcatgttctatgatgttgtg |
195 |
Q |
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| T |
9624657 |
aagggataaatgccttcctagtaaatatcacaaataacattagataatgaaaaccaagttacaagcatgttcaatgatgttgtg |
9624574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 112 - 195
Target Start/End: Original strand, 13612589 - 13612672
Alignment:
| Q |
112 |
aagggataaatgccctcctagtcaatatcacaaataacattatgaaaagaaaaccaagttacacgcatgttctatgatgttgtg |
195 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||||| || ||||||||||||||| |||||||| ||||||||||| |
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| T |
13612589 |
aagggataaatgccttcctagtaaatatcacaaataacattagataatgaaaaccaagttacaagcatgttcaatgatgttgtg |
13612672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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