View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16391_high_2 (Length: 594)
Name: NF16391_high_2
Description: NF16391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16391_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 11 - 579
Target Start/End: Original strand, 6697848 - 6698420
Alignment:
| Q |
11 |
cataggacttgggtggggtctgtcccaaacttggtaaacttgtctttattgaatgactctgttcctgttttcattacctttacttcaatcgtgcataaac |
110 |
Q |
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| T |
6697848 |
cataggacttgggtggggtctgtcccaaacttggtaaacttgtctttattgaatgactctgttcctgttttcattacctttacttcaatcgtgcataaac |
6697947 |
T |
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| Q |
111 |
atttaaacacccatttgtcaccccaaaacagttaaggataccccaaacacaccattggatttgaaaatcattgtgcaagcttttgattgtaaccaactcc |
210 |
Q |
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| T |
6697948 |
atttaaacacccatttgtcaccccaaaacagttaaggataccccaaacacaccattggatttgaaaatcattgtgcaagcttttgattgtaaccaactcc |
6698047 |
T |
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| Q |
211 |
atgcnnnnnnnttaatttgttgatttccacaccctccggtgtgtaatcattagttaacaagaaaaattatcaaaaaagattaattatta----ttagtta |
306 |
Q |
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| T |
6698048 |
atgcaaaaaaattaatttgttgatttccacaccctccagtgtgtaatcattagttaacaagaaaaattatcaaaaaagattaattattaattattagtta |
6698147 |
T |
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| Q |
307 |
gtcaaacaccgcttaaaaatccaaacacgggttctctacataagtacatgaaccaatatgttctggaaaaaagggttgcatttggctcatcgattatcta |
406 |
Q |
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| T |
6698148 |
gtcaaacaccgcttaaaaatccaaacacgggttctctacataagtacatgaaccaatatgttctggaaaaaagggttgcatttggctcatcgattatcta |
6698247 |
T |
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| Q |
407 |
aaaatactaattaaacattgatgaagatatgattcttcaacgatgttatgcccttagaagtgtctcttcaacatggtggataggtggagaaaatgtttca |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6698248 |
aaaatactaattaaacattgatgaagatatgattcttcaacgatgttatgcccttagaagtgtctcttcaacatggcggataggtggagaaaatgtttca |
6698347 |
T |
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| Q |
507 |
gcttttgcatttgcaccaacaccaacatgattacttggataacaagctttacaaagctcattatacctatttg |
579 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6698348 |
gcttttgcatttgcaccaacaccaacatgattacttggataacaagctttgcaaagctcattatacctatttg |
6698420 |
T |
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