View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16391_low_10 (Length: 329)

Name: NF16391_low_10
Description: NF16391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16391_low_10
NF16391_low_10
[»] chr4 (2 HSPs)
chr4 (77-329)||(26573453-26573705)
chr4 (13-78)||(26574123-26574188)
[»] chr2 (19 HSPs)
chr2 (168-329)||(10350734-10350901)
chr2 (10-78)||(10334888-10334956)
chr2 (10-78)||(10370990-10371058)
chr2 (13-78)||(8574418-8574483)
chr2 (17-80)||(10340609-10340672)
chr2 (78-305)||(10339974-10340214)
chr2 (143-283)||(10370439-10370585)
chr2 (13-76)||(9287760-9287823)
chr2 (13-78)||(10346863-10346928)
chr2 (143-227)||(10346306-10346390)
chr2 (13-78)||(11425340-11425405)
chr2 (13-76)||(9285144-9285207)
chr2 (17-78)||(10351330-10351391)
chr2 (24-78)||(9318714-9318768)
chr2 (14-78)||(9291125-9291191)
chr2 (28-78)||(9069022-9069072)
chr2 (24-70)||(9315244-9315290)
chr2 (24-70)||(9326586-9326632)
chr2 (13-78)||(9273220-9273285)
[»] chr3 (1 HSPs)
chr3 (10-78)||(37461562-37461630)
[»] chr8 (1 HSPs)
chr8 (13-65)||(41968355-41968408)
[»] scaffold0667 (1 HSPs)
scaffold0667 (24-70)||(1726-1772)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 77 - 329
Target Start/End: Complemental strand, 26573705 - 26573453
Alignment:
Q  77 gtattccatactgttttaaatgagatacctgttttgaaatgatcatgcaattatagtgnnnnnnnattttaaaatcattttgagccatatataagtatga 176  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||       |||||||||||||||| |||||||| |||||||||    
T  26573705 gtattccatactgttttaaatgagatacctgttttgaaatgatcgtacaattatagtgtttttttattttaaaatcatttttagccatatgtaagtatga 26573606  T
Q  177 tacttttatagttttaggaatttggaaatgtgtgttgcatgattttggaac-nnnnnnnnnaatttcattttgtagtttttattgagaattggaaaatca 275  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||    
T  26573605 tactgttatagttttaggaatttggaaatgtgtgttgcatgattttggaacatttttttttaatttcattttgtagtttttattgagaattggaaaatca 26573506  T
Q  276 agttgaaagataatactgtgataaacattaatattgcattactttgagttgaat 329  Q
    ||||||||||| |||||||||||| ||||| | |||||||||||||||||||||    
T  26573505 agttgaaagat-atactgtgataagcattagttttgcattactttgagttgaat 26573453  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 26574188 - 26574123
Alignment:
Q  13 acctgtgaagtgcagctgaaacaggatgctccagttgtttcttgtgatggaattagtcaccttggt 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26574188 acctgtgaagtgcagctgaaacaggatgctccagttgtttcttgtgatggaattagtcaccttggt 26574123  T

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Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 168 - 329
Target Start/End: Complemental strand, 10350901 - 10350734
Alignment:
Q  168 taagtatgatactttta-tagttttaggaatttggaaatgtgtgttgcatgattttggaacnnnnnnnnn----aatttcattttgtagtttttattg-a 261  Q
    |||| |||||||| ||| |||||||| |||||| |||||||||||||||||||||||||||             |||||||||||||||||||| ||  |    
T  10350901 taagaatgatactgttaatagttttaagaatttagaaatgtgtgttgcatgattttggaactttttttttttttaatttcattttgtagtttttttttta 10350802  T
Q  262 gaattggaaaatcaagttgaaagataatactgtgataaacattaatattgcattactttgagttgaat 329  Q
    |||||||||||||||||||||||| ||||||||||||| ||||| |||| ||||||||||||||||||    
T  10350801 gaattggaaaatcaagttgaaagagaatactgtgataagcattagtattccattactttgagttgaat 10350734  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 10334956 - 10334888
Alignment:
Q  10 agaacctgtgaagtgcagctgaaacaggatgctccagttgtttcttgtgatggaattagtcaccttggt 78  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10334956 agaacgtgtgaagtgcagctgaaacaggatgctccagttgtttcttgtgatggaattagtcaccttggt 10334888  T

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Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 10371058 - 10370990
Alignment:
Q  10 agaacctgtgaagtgcagctgaaacaggatgctccagttgtttcttgtgatggaattagtcaccttggt 78  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10371058 agaacgtgtgaagtgcagctgaaacaggatgctccagttgtttcttgtgatggaattagtcaccttggt 10370990  T

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Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 8574418 - 8574483
Alignment:
Q  13 acctgtgaagtgcagctgaaacaggatgctccagttgtttcttgtgatggaattagtcaccttggt 78  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8574418 acctgtgatgtgcagctgaaacaggatgctcaagttgtttcttgtgatggaattagtcaccttggt 8574483  T

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Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 10340672 - 10340609
Alignment:
Q  17 gtgaagtgcagctgaaacaggatgctccagttgtttcttgtgatggaattagtcaccttggtat 80  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  10340672 gtgaagtgcagctgaaacaggatgctccagttgtttcttatgatggaattagtcacctcggtat 10340609  T

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Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 305
Target Start/End: Complemental strand, 10340214 - 10339974
Alignment:
Q  78 tattccatactgttttaaatgagata------cctgttttgaaatgatcatgcaattatagtgnnnnnnnattttaaaatcattttgagccatatataag 171  Q
    ||||||||||| ||||||||||||||      |||||||||||| |||||| | |||||| ||        |||| |||||||||| ||| | || ||||    
T  10340214 tattccatactattttaaatgagatagcgaaacctgttttgaaaggatcatacgattatattgtgttttcttttttaaatcatttttagcaaaatgtaag 10340115  T
Q  172 tatgatacttttatagttttaggaatttggaaatgtgtgttgcatgattttggaacnnnnnnnnn---------aatttcattttgtagtttttattgag 262  Q
     |||||||| ||||||||||||||||||||||||||||  |||||||||||| |||                  |||||||||||||||||||||||  |    
T  10340114 aatgatactgttatagttttaggaatttggaaatgtgt--tgcatgattttgaaacatttttttttttttttttaatttcattttgtagtttttattttg 10340017  T
Q  263 aattggaaaatcaagttgaaagataatactgtgataaacatta 305  Q
    ||| |||| |||||||||||||||||||||||||||| |||||    
T  10340016 aataggaagatcaagttgaaagataatactgtgataagcatta 10339974  T

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Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 283
Target Start/End: Complemental strand, 10370585 - 10370439
Alignment:
Q  143 ttttaaaatcattttgagccatatataagtatgatacttttatagttttaggaatttggaaatgtgtgttgcatgattttggaac------nnnnnnnnn 236  Q
    |||| |||||||||| ||||| |  |||| |||||||| || |||||||||||||||| ||||||||||| ||||||||||||||                   
T  10370585 tttttaaatcatttttagccaaacctaagaatgatactgttctagttttaggaatttgtaaatgtgtgttacatgattttggaacattattttttttttt 10370486  T
Q  237 aatttcattttgtagtttttattgagaattggaaaatcaagttgaaa 283  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  10370485 aatttcattttgtagtttttattgagaataggaaaatcaagttgaaa 10370439  T

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Target: chr2; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 9287823 - 9287760
Alignment:
Q  13 acctgtgaagtgcagctgaaacaggatgctccagttgtttcttgtgatggaattagtcaccttg 76  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  9287823 acctgtgatgtgcagctgaaacaggatgctcaagttgtttcttgtgatggagttagtcaccttg 9287760  T

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Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 10346928 - 10346863
Alignment:
Q  13 acctgtgaagtgcagctgaaacaggatgctccagttgtttcttgtgatggaattagtcaccttggt 78  Q
    ||||||||||||||||||||||| || || || |||||||||||||||||||||||||||||||||    
T  10346928 acctgtgaagtgcagctgaaacatgaagcaccggttgtttcttgtgatggaattagtcaccttggt 10346863  T

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Target: chr2; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 10346390 - 10346306
Alignment:
Q  143 ttttaaaatcattttgagccatatataagtatgatacttttatagttttaggaatttggaaatgtgtgttgcatgattttggaac 227  Q
    |||||||| |||||| | ||| || |||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||    
T  10346390 ttttaaaagcatttttacccaaatgtaagaatgatactgttatagttttatgaatttggaaatgtgtgctgcatgattttggaac 10346306  T

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Target: chr2; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 11425340 - 11425405
Alignment:
Q  13 acctgtgaagtgcagctgaaacaggatgctccagttgtttcttgtgatggaattagtcaccttggt 78  Q
    |||||||| |||||||||||||||||| ||| ||||||||||||||| ||||||| ||||||||||    
T  11425340 acctgtgatgtgcagctgaaacaggatactcgagttgtttcttgtgaaggaattaatcaccttggt 11425405  T

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Target: chr2; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 9285144 - 9285207
Alignment:
Q  13 acctgtgaagtgcagctgaaacaggatgctccagttgtttcttgtgatggaattagtcaccttg 76  Q
    |||||||| |||||||||||||| ||||||| ||| ||||||||||||||||||||||| ||||    
T  9285144 acctgtgatgtgcagctgaaacatgatgctcaagtagtttcttgtgatggaattagtcatcttg 9285207  T

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Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 10351391 - 10351330
Alignment:
Q  17 gtgaagtgcagctgaaacaggatgctccagttgtttcttgtgatggaattagtcaccttggt 78  Q
    ||||||||||||||||| |||||||| | |||||||||||||||||||||  ||||||||||    
T  10351391 gtgaagtgcagctgaaataggatgcttctgttgtttcttgtgatggaattgctcaccttggt 10351330  T

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Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 9318768 - 9318714
Alignment:
Q  24 gcagctgaaacaggatgctccagttgtttcttgtgatggaattagtcaccttggt 78  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||  ||||||||    
T  9318768 gcagctgaaacaggatactcaagttgtttcttgtgatggaattagaaaccttggt 9318714  T

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Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 9291191 - 9291125
Alignment:
Q  14 cctgtgaagtgcagctgaaacaggatgctcca--gttgtttcttgtgatggaattagtcaccttggt 78  Q
    ||||||| |||||||||||||||||| ||| |  ||||||| |||||||||||||||| ||||||||    
T  9291191 cctgtgatgtgcagctgaaacaggattctcaaaagttgtttgttgtgatggaattagttaccttggt 9291125  T

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Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 9069022 - 9069072
Alignment:
Q  28 ctgaaacaggatgctccagttgtttcttgtgatggaattagtcaccttggt 78  Q
    |||||||| ||||||| ||||| ||||||||||| ||||||||||||||||    
T  9069022 ctgaaacatgatgctcaagttgcttcttgtgatgtaattagtcaccttggt 9069072  T

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Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 9315290 - 9315244
Alignment:
Q  24 gcagctgaaacaggatgctccagttgtttcttgtgatggaattagtc 70  Q
    |||||||||||| ||||||| | ||||||||||||||||||||||||    
T  9315290 gcagctgaaacatgatgctcaacttgtttcttgtgatggaattagtc 9315244  T

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Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 9326632 - 9326586
Alignment:
Q  24 gcagctgaaacaggatgctccagttgtttcttgtgatggaattagtc 70  Q
    |||||||| ||||||| ||| ||||||||||||||||||||||||||    
T  9326632 gcagctgatacaggatactcaagttgtttcttgtgatggaattagtc 9326586  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 9273285 - 9273220
Alignment:
Q  13 acctgtgaagtgcagctgaaacaggatgctccagttgtttcttgtgatggaattagtcaccttggt 78  Q
    ||||||||  |||||||  |||| ||||||| ||||| ||||||| |||||||||||| |||||||    
T  9273285 acctgtgatatgcagctttaacacgatgctcaagttgcttcttgttatggaattagtctccttggt 9273220  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 37461630 - 37461562
Alignment:
Q  10 agaacctgtgaagtgcagctgaaacaggatgctccagttgtttcttgtgatggaattagtcaccttggt 78  Q
    ||||||||| | |||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||    
T  37461630 agaacctgtaatgtgcagctgaaacagggtgctcaagttgtttcttgtgatggaattagtctccttggt 37461562  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 41968355 - 41968408
Alignment:
Q  13 acctgtgaagtgcagctgaaac-aggatgctccagttgtttcttgtgatggaat 65  Q
    |||||||| ||||||||||||| ||||||||| ||||||||||| |||||||||    
T  41968355 acctgtgatgtgcagctgaaaccaggatgctcaagttgtttcttctgatggaat 41968408  T

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Target: scaffold0667 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 1772 - 1726
Alignment:
Q  24 gcagctgaaacaggatgctccagttgtttcttgtgatggaattagtc 70  Q
    ||||||||||||| || ||| ||||||||||||| ||||||||||||    
T  1772 gcagctgaaacagaattctcaagttgtttcttgtaatggaattagtc 1726  T

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