View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16391_low_12 (Length: 327)
Name: NF16391_low_12
Description: NF16391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16391_low_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 4177617 - 4177926
Alignment:
| Q |
1 |
cacacatatatgtatatacatagagagaa---atacacacaaaaattccaaaacccaaacaaataatattacataatttgatacaatatttctgtctaca |
97 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4177617 |
cacaaatatatgtatatacatagagagaagaaatagacacaaaaattccaaaacccagaca--taatattacataatttgatacaatatttttgtctaca |
4177714 |
T |
|
| Q |
98 |
acacttgctaaacaaggtgtctaaaacatttatgtcactgctcattgattaattccaacatgtgttgggagctgacaaaaaattagggcaaggattatgg |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4177715 |
acacttgctaaacaaggtgtctaaaacatttatgtcactgctcattgattaattctaacaagtgttgggagctgacaaaaaattagggcaaggattatgg |
4177814 |
T |
|
| Q |
198 |
aaatgattattgactgatactggaggagttgaatatatcagagatggtggtgtaattaatggtataccaaaaaatgaagaatccaaacttggaaaaggtc |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4177815 |
aaatgattattgactgatactggaggagttgaatatatcagagatggtggtgtaattaatggtataccaaaaaatgaagaatccaaacttggaaaaggtc |
4177914 |
T |
|
| Q |
298 |
ttcggctcaact |
309 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
4177915 |
tttggctcaact |
4177926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 4078436 - 4078123
Alignment:
| Q |
1 |
cacacatatatgtatatacatagagagaaatacacacaaaaattccaaaacccaaacaaataatattacat-aatttgatacaatatttctgtctacaac |
99 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4078436 |
cacaaatatatgtatatacatagagaaaaatacacacaaaaattccaaaacccaaacaaataatattacatcaatttgatacaatatttctgtctacaac |
4078337 |
T |
|
| Q |
100 |
acttgctaaacaaggtgtctaaaacatttatgtcactgctcattgattaattccaacatgtgttgggagctgacaaaaaattagggcaaggattatggaa |
199 |
Q |
| |
|
||| | ||||||||||||||||||||||| |||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4078336 |
actaggtaaacaaggtgtctaaaacatttctgtcactgcttattgattaattgtaacaagtgttgggagctgacaaaaaattagggcaaggattatggaa |
4078237 |
T |
|
| Q |
200 |
atgattattgactg----atactggaggagttgaatatatcagagatggtggtgtaattaatggtataccaaaaaatgaagaatccaaacttggaaaagg |
295 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4078236 |
atgattattgactgatatatactggaggagttgaatatatcagagatggtggtgtaattaatggtataccaaaaaatgaagaatccaaacttggaaaagg |
4078137 |
T |
|
| Q |
296 |
tcttcggctcaact |
309 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
4078136 |
tctttggctcaact |
4078123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University