View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16391_low_15 (Length: 309)
Name: NF16391_low_15
Description: NF16391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16391_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 34683165 - 34683460
Alignment:
| Q |
1 |
gctttgatgacaatgacagtgtcgaaggcagtgtcatccaccgtaaatggaaagttcttgggcgaacaaaaaacgcccacaaatatggtagcattcagtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34683165 |
gctttgatgacaatgacagtgtcgaaggcagtgtcatccaccgtaaatggaaagttcttgggcgaaccaaaaacgcccacaaatatggtagcattcagtt |
34683264 |
T |
|
| Q |
101 |
tgctcaatgttcaacattaaagcttcgtagagtgagggtgaaagttcactaaagatatgttaagtctttgaatttcaatagtaaattgtaaatcaattca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34683265 |
tgctcaatgttcaacattaaagcttcgtagagtgagggtgaaagttcactaaagatatgttaagtctttgaatttcaatagtaaattgtaaatcaattca |
34683364 |
T |
|
| Q |
201 |
atctttaaacgttgatcgtttttggtccacgatgcttacaaatacaaatttaagtattgagtgtcttcgcaaatactattcctcgccgtcaaagaa |
296 |
Q |
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| T |
34683365 |
atctttaaaagttgatcgtttttggtccacgatgcttacaaatacaaatttaagtattgagtgtcttcgcaaatactattcctcgccgtcaaagaa |
34683460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 27084154 - 27083941
Alignment:
| Q |
3 |
tttgatgacaatgacagtgtcgaaggcagtgtcatccaccgtaaatggaaagttcttgggcgaacaaaaaacgcccacaaatatggtagcattcagtttg |
102 |
Q |
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|||||||||||||| ||| | |||||| ||||||| |||||||||||||| |||||||||||| || ||||||||| |||||| |||| |||||| |
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| T |
27084154 |
tttgatgacaatgatagtatagaaggcggtgtcatgaaccgtaaatggaaacctcttgggcgaaccaacggcgcccacaattatggtctcattaagtttg |
27084055 |
T |
|
| Q |
103 |
ctcaatgttcaacattaaagcttcgtagagtgagggtgaaagttcactaaagatatgttaagtctttgaatttcaatagtaaattgtaaatcaattcaat |
202 |
Q |
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||||||||||||||||||||||| |||||| ||||||||| ||| ||| |||| ||||||||||||||||| | ||||||||||||| ||||||||| |
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| T |
27084054 |
ttcaatgttcaacattaaagcttcctagagtaagggtgaaa-atcaataatgataagttaagtctttgaatttgagcagtaaattgtaaaacaattcaat |
27083956 |
T |
|
| Q |
203 |
ctttaaacgttgatc |
217 |
Q |
| |
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|||||||| |||||| |
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| T |
27083955 |
ctttaaacattgatc |
27083941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 26980792 - 26980882
Alignment:
| Q |
9 |
gacaatgacagtgtcgaaggcagtgtcatccaccgtaaatggaaagttcttgggcgaacaaaaaacgcccacaaatatggtagcattcagt |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26980792 |
gacaatgacagtgtcgaaggcagtgtcatccaccgtaaatggaaagttattgggcgaaccaaaaacgcccacaaatatggtagcattcagt |
26980882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 94 - 223
Target Start/End: Original strand, 27022203 - 27022332
Alignment:
| Q |
94 |
ttcagtttgctcaatgttcaacattaaagcttcgtagagtgagggtgaaagttcactaaagatatgttaagtctttgaatttcaatagtaaattgtaaat |
193 |
Q |
| |
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||||||||| ||||||||||||||||||||||| |||||||||||| |||||| || ||||||||||||||||||||||||||| |||||||| |||| |
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| T |
27022203 |
ttcagtttgttcaatgttcaacattaaagcttcctagagtgagggtcaaagttaacgaaagatatgttaagtctttgaatttcagccgtaaattggaaat |
27022302 |
T |
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| Q |
194 |
caattcaatctttaaacgttgatcgttttt |
223 |
Q |
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| || |||||||||||| ||||||| |||| |
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| T |
27022303 |
cgatccaatctttaaacattgatcgctttt |
27022332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 230 - 296
Target Start/End: Original strand, 26981067 - 26981133
Alignment:
| Q |
230 |
cgatgcttacaaatacaaatttaagtattgagtgtcttcgcaaatactattcctcgccgtcaaagaa |
296 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
26981067 |
cgatgcttacaaatacaaatttaagtattgagtgtgttcgcaaatactattccttgccgtcaaagaa |
26981133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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