View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16391_low_16 (Length: 302)
Name: NF16391_low_16
Description: NF16391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16391_low_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 30 - 285
Target Start/End: Complemental strand, 41555854 - 41555599
Alignment:
| Q |
30 |
gagcagagagaaatcaatgattgggatggaagctgcaatctcatctgcaacatcaataatatcaccatgttctgtgagggagtggtaattggaaggaatg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41555854 |
gagcagagagaaatcaatgattgggatggaagctgcaatctcatctgcaacatcaataatatcaccatgttctgtgagggagtggtaattggaaggaatg |
41555755 |
T |
|
| Q |
130 |
agagaggttccatttgattccgcaaaggctttgatgcttgaaatatttgatgtatgaacctttgttggttctgatgatgaaattgtagtagctgaagcca |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41555754 |
agagaggttccatttgattccgcaaaggctttgatgcttgaaatatttgatgtatgaacctttgttggttctgatgatgaaattgtagtagctgaagcca |
41555655 |
T |
|
| Q |
230 |
tgaatgtatctttgatgagttcttgagtggaattgatatatattgaatattgatgt |
285 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41555654 |
tggatgtatctttgatgagttcttgagtggaattgatatatattgaatattgatgt |
41555599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 128
Target Start/End: Complemental strand, 41560502 - 41560408
Alignment:
| Q |
34 |
agagagaaatcaatgattgggatggaagctgcaatctcatctgcaacatcaataatatcaccatgttctgtgagggagtggtaattggaaggaat |
128 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||| |||| |||||||| ||||||| || |||||| ||||||||||||| | |||||||| |
|
|
| T |
41560502 |
agagagaaatcaatgactgggatggaagctgcaagctcctctgtaacatcaacaatatcatcaggttctgcgagggagtggtaacttgaaggaat |
41560408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 244
Target Start/End: Complemental strand, 41560404 - 41560313
Alignment:
| Q |
153 |
aaaggctttgatgcttgaaatatttgatgtatgaacctttgttggttctgatgatgaaattgtagtagctgaagccatgaatgtatctttga |
244 |
Q |
| |
|
|||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||||||| || ||||||||||||| |||||| ||||| |
|
|
| T |
41560404 |
aaaggctttgatacttgaaatatttgatgcatcaacttttgtaggttctgatgatgaaatgaaaggagctgaagccatggatgtatatttga |
41560313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University