View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16391_low_17 (Length: 267)
Name: NF16391_low_17
Description: NF16391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16391_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 26573494 - 26573263
Alignment:
| Q |
17 |
atactgtgataaacattagtattgcattactttgagttgaattgcaactgtgatgggtaatgcttcgttttaagcaactgtctatccctttatttcatat |
116 |
Q |
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| T |
26573494 |
atactgtgataagcattagttttgcattactttgagttgaattgcaactgtgatgggtaatgcttcgttttaagcaactgtctatccctttatttcatat |
26573395 |
T |
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| Q |
117 |
ttataagtgaattataggatgtttgtttgtttcttatgcattttctatctgctttagcctttctgtgttctcttttgtaaatcatttcannnnnnnnngc |
216 |
Q |
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| T |
26573394 |
ttataagtgaattataggatgtttgtttgtttcttatgcattttctatctgctttagcctttctgtgttctcttttgtaaatcatttcatttttttttgc |
26573295 |
T |
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| Q |
217 |
aaacgaactgtcctttcgcctatggttgtagt |
248 |
Q |
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||| |||||||||||||||||||||||||||| |
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| T |
26573294 |
aaaagaactgtcctttcgcctatggttgtagt |
26573263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 10350776 - 10350550
Alignment:
| Q |
16 |
aatactgtgataaacattagtattgcattactttgagttgaattgcaactgtgatgggtaatgcttcgttttaagcaactgtctatccctttatttcata |
115 |
Q |
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| T |
10350776 |
aatactgtgataagcattagtattccattactttgagttgaattgcaactgtgatgggtgatactaagttttaagcaactgtgtatccctttatttcata |
10350677 |
T |
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| Q |
116 |
tttataagtgaattataggatgtttgtttgtttcttatgcattttctatctgctttagcctttctgtgttctcttttgtaaatcatttcannnnnnnnng |
215 |
Q |
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| T |
10350676 |
tttataagtgaattataggatg----tttgattcttatgcattttctatttgctgcagcctttctgggttctcttttgtaaatcatttca--attttttg |
10350583 |
T |
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| Q |
216 |
caaacgaactgtcctttcgcctatggttgtagt |
248 |
Q |
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|||| ||||||||| |||||||||||||||||| |
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| T |
10350582 |
caaaagaactgtccgttcgcctatggttgtagt |
10350550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 53 - 205
Target Start/End: Complemental strand, 10346250 - 10346100
Alignment:
| Q |
53 |
ttgaattgcaactgtgatgggtaatgcttcgttttaagcaactgtctatccctttatttcatatttataagtgaattataggatgtttgtttgtttctta |
152 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||| ||| ||||||||||||| | ||||||||||| | |
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| T |
10346250 |
ttgaattgcaactgtgatgggtaatgcttcgttttaagcaactgcgtctccctttattccatattaatacgtgaattatagga--tctgtttgtttctga |
10346153 |
T |
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| Q |
153 |
tgcattttctatctgctttagcctttctgtgttctcttttgtaaatcatttca |
205 |
Q |
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| T |
10346152 |
tgcattttctatttgcttcatcttttcttggttctcttttgtaaataatttca |
10346100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 128 - 205
Target Start/End: Complemental strand, 10339724 - 10339647
Alignment:
| Q |
128 |
ttataggatgtttgtttgtttcttatgcattttctatctgctttagcctttctgtgttctcttttgtaaatcatttca |
205 |
Q |
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| T |
10339724 |
ttataggatttttgtttgtttcttatgcattttctatttgctttagcctttctgggttctcttttgtaaatcatttca |
10339647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 10370438 - 10370364
Alignment:
| Q |
21 |
tgtgataaacattagtattgcattactttgagttgaattgcaactgtgatgggtaatgcttcgttttaagcaact |
95 |
Q |
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| T |
10370438 |
tgtgataagcattaatgctgtattagtttgagttgaattgcaactgtgatgggtaatgctttgttttaagcaact |
10370364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 10339943 - 10339902
Alignment:
| Q |
44 |
tactttgagttgaattgcaactgtgatgggtaatgcttcgtt |
85 |
Q |
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| T |
10339943 |
tactttgagttgaattgcaactatgatgagtaatgcttcgtt |
10339902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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