View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16391_low_18 (Length: 263)
Name: NF16391_low_18
Description: NF16391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16391_low_18 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 56 - 244
Target Start/End: Original strand, 35387600 - 35387788
Alignment:
| Q |
56 |
caccagatccgtcttcatcaaaatcaccaccgccagtgtcgctagattctggtcaacctgtgacggctctccgatagagagaactgccacccaaacaatc |
155 |
Q |
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| T |
35387600 |
caccagatccgccttcatcacaatcaccaccaccagagtcgctagactctagtcaacctgcaacagatctccaacagagagaaccgccacccaaaccaca |
35387699 |
T |
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| Q |
156 |
ggattggtcgtcttcagatgcaacaagagacaagacccgatccaaggaggaagggaaagagccaacgatgaatactcagcacataccac |
244 |
Q |
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| T |
35387700 |
agattggttgtcttcatatgcaacaagagacaggccccgatccaaggaggaagggaaagagccaacaattaatactcagcacataccac |
35387788 |
T |
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Target: scaffold0026 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 171 - 244
Target Start/End: Original strand, 79733 - 79806
Alignment:
| Q |
171 |
agatgcaacaagagacaagacccgatccaaggaggaagggaaagagccaacgatgaatactcagcacataccac |
244 |
Q |
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| T |
79733 |
agatgcaacaagagacaagacccgatccaaggaggaaaggaaagagccaacaatgaatactcagcacataccac |
79806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 20056569 - 20056524
Alignment:
| Q |
13 |
gagacacagagaagtgagaaggagagaaggattgttaccgatccac |
58 |
Q |
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| T |
20056569 |
gagacacaaagaagtgataaggagagaaggatttttaccgatccac |
20056524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 20056509 - 20056473
Alignment:
| Q |
55 |
ccaccagatccgtcttcatcaaaatcaccaccgccag |
91 |
Q |
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| T |
20056509 |
ccaccagatccgccttcatcacaatcaccaccgccag |
20056473 |
T |
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