View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16391_low_21 (Length: 236)
Name: NF16391_low_21
Description: NF16391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16391_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 39976191 - 39976411
Alignment:
| Q |
1 |
tctataaattgctaaaataattccaattggtagccacatgaacatgtagagtgttgctaatggtgttggcaagaatgctaatcttccatcatgaaatatt |
100 |
Q |
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| T |
39976191 |
tctataaattgctaaaataattccaattggtagccacatgaacatgtagagtgttgctaatggtgttggcaagaatgctaatcttccatcatgaaatatt |
39976290 |
T |
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| Q |
101 |
aatggctttggatatttgtcccttggcatgattgaatttggactattcttgttttcttcattgtttaccacataagcttcctgtcataatcatggagagg |
200 |
Q |
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| T |
39976291 |
aatggctttggatatttgtcccttggcatgattgaatttggactattcttgttttcttcattgtttaccacataagcttcctgtcataatcatggagagg |
39976390 |
T |
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| Q |
201 |
tggaattagacataacatatc |
221 |
Q |
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| T |
39976391 |
tggaattagacataacatatc |
39976411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 28538482 - 28538296
Alignment:
| Q |
1 |
tctataaattgctaaaataattccaattggtagccacatgaacatgtagagtgttgctaatggtgttggcaagaatgctaatcttccatcatgaaatatt |
100 |
Q |
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| T |
28538482 |
tctataaatggcaaaagtaattccaattggaatccacacgaacatgcagaaagttgctgagggtgtaggcaagaatgctagtct--caccatgaaatact |
28538385 |
T |
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| Q |
101 |
aatggctttggatatttgtcccttggcatgattgaatttggactattcttgttttcttcattgtttaccacataagcttcctgtcataatcat |
193 |
Q |
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| T |
28538384 |
aatggctttggatatttct-ccttggcatcactgagttttgacta---ttttttccttcattgttcatcacataagcttcctgtcataatcat |
28538296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 32 - 143
Target Start/End: Original strand, 16148012 - 16148123
Alignment:
| Q |
32 |
agccacatgaacatgtagagtgttgctaatggtgttggcaagaatgctaatcttccatcatgaaatattaatggctttggatatttgtcccttggcatga |
131 |
Q |
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| T |
16148012 |
agccacatgaacatgtagagagttgatgaaggtgtagggaaaaatgctagtcttccatcatgaaatattaatggctttggatacttttcctttggcatga |
16148111 |
T |
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| Q |
132 |
ttgaatttggac |
143 |
Q |
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| T |
16148112 |
ttgaacttggac |
16148123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 16194942 - 16194826
Alignment:
| Q |
19 |
aattccaattggtagccacatgaacatgtagagtgttgctaatggtgttggcaagaatgctaatcttccatcatgaaatattaatggctttggatatttg |
118 |
Q |
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|||||| ||||| |||||||||||||||||||| |||| | | ||||| || |||||||||| || ||||||||||||||||||||||||||||| || |
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| T |
16194942 |
aattcccattggaagccacatgaacatgtagagagttgatgaaggtgtagggaagaatgctagcctgccatcatgaaatattaatggctttggatacttt |
16194843 |
T |
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| Q |
119 |
tcccttggcatgattga |
135 |
Q |
| |
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||||||||||| ||||| |
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| T |
16194842 |
tcccttggcataattga |
16194826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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