View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16391_low_22 (Length: 212)
Name: NF16391_low_22
Description: NF16391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16391_low_22 |
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| [»] scaffold0126 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 21375211 - 21375378
Alignment:
| Q |
15 |
agatgaacttaagagactcaaatggaccaaaagttaattataggaccaaaatgataccaaataaatagttaagagattaaaagaacaatttaacgtattt |
114 |
Q |
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| T |
21375211 |
agatgaacttaagagactcaaatggaccaaaagttaattataggaccaaaatgataccaaataaatagttaagagattaaaagaacaatttagcgtattt |
21375310 |
T |
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| Q |
115 |
tatactattttgtcccaaaaattatctatttggttaatataattttgttctcatactatcgttttaag |
182 |
Q |
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| T |
21375311 |
tatactatttggtcccaaaaattatctatttggttaatataattttgttctcatactatcgttttaag |
21375378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 1934018 - 1934075
Alignment:
| Q |
13 |
agagatgaacttaagagactcaaatggaccaaaagttaattataggaccaaaatgatac |
71 |
Q |
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| T |
1934018 |
agagatgaacttaagggactcaaatgaaccaaaa-ttaattatagcaccaaagtgatac |
1934075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 86
Target Start/End: Complemental strand, 34817383 - 34817354
Alignment:
| Q |
57 |
ggaccaaaatgataccaaataaatagttaa |
86 |
Q |
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| T |
34817383 |
ggaccaaaatgataccaaataaatagttaa |
34817354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0126 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0126
Description:
Target: scaffold0126; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 18587 - 18679
Alignment:
| Q |
15 |
agatgaacttaagagactcaaatggaccaaaagttaattataggaccaaaatgataccaaataaatagttaagagattaaaagaacaatttaac |
108 |
Q |
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| T |
18587 |
agatgaaattaagggactcaaatggaccaaaaat-aattatggtaccaaagtgataccagataaatagttaaaagatcaaacgaacaatttaac |
18679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 9378695 - 9378767
Alignment:
| Q |
14 |
gagatgaacttaagagactcaaatggaccaaaagttaattataggaccaaaatgataccaaataaatagttaa |
86 |
Q |
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| T |
9378695 |
gagatgaacttaaaggacttaaacggaccaaaaattaattatgcgaccaaagtgataccaaaaaaatagttaa |
9378767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 33957381 - 33957441
Alignment:
| Q |
48 |
ttaattataggaccaaaatgataccaaataaatagttaagagattaaaagaacaatttaac |
108 |
Q |
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| T |
33957381 |
ttaattatgggaccaaagtgatactaattaaaaagttaagagacgaaaataacaatttaac |
33957441 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 29076609 - 29076553
Alignment:
| Q |
50 |
aattataggaccaaaatgataccaaataaatagttaagagattaaaagaacaattta |
106 |
Q |
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| T |
29076609 |
aattatgggaccaaaatgatactaattaaatagttaagagatcaaaatagcaattta |
29076553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 12095409 - 12095339
Alignment:
| Q |
11 |
acagagatgaacttaagagactcaaatggaccaaaagttaattataggaccaaaatgataccaaataaata |
81 |
Q |
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| T |
12095409 |
acagagatgaacttaaaggacttaaacggaccaaaatttaattatgggaccaaagcgatacaaaaaaaata |
12095339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 12873118 - 12873070
Alignment:
| Q |
48 |
ttaattataggaccaaaatgataccaaataaatagttaagagattaaaa |
96 |
Q |
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| T |
12873118 |
ttaattaaaggaccaaagtgatactaattaaatagttaagggattaaaa |
12873070 |
T |
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