View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16391_low_3 (Length: 466)
Name: NF16391_low_3
Description: NF16391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16391_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 11 - 441
Target Start/End: Complemental strand, 39994037 - 39993607
Alignment:
| Q |
11 |
cagagatcaaccatcacactaaaatatactctaatcgtatatatggtaacaaacatactctaaaatgactcatcacattatttgattttgtacttcttat |
110 |
Q |
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| T |
39994037 |
cagagatcaaccatcacacgaaaatatactctaatcgtatatatggtaacaaacatactctaaaatgactcatcacattatttgattttgtacttcttat |
39993938 |
T |
|
| Q |
111 |
tagtaattgatcctttgttctatgtgttagttttgatatttaagttcctattttgtttataaatataccttactcctcactattggactctgacctatgg |
210 |
Q |
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| T |
39993937 |
tagtaatcgatcctttgttctatgtgttagttttgatatttaagttcctattttgtttattactataccttactcctcactattggactttgacctatgg |
39993838 |
T |
|
| Q |
211 |
taacacacattcagatagggaaaatggcttagagagaaagtgaaatgcaaaataaaactactttattcatgggtgcaacctctgtttatacattgctcat |
310 |
Q |
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| T |
39993837 |
taacacacattcagatagggaaaatggcttagagagaaagtgaaatgcaaaataaaactactttattcatgggtacaacctctgtttatacattgctcat |
39993738 |
T |
|
| Q |
311 |
tcaatatggatttaggctcattccactcaacaaggctcaatacaatcaacacaaacaattacttgcataacaagtaatttaactacttagctaacttctt |
410 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39993737 |
tctatatggatttaggctcattccactcaacaaggctcaatacaatcaacacaaacaattacttgcataacaagtaatttaactacttagttaacttctt |
39993638 |
T |
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| Q |
411 |
aactaactaatactactttgatttatatatg |
441 |
Q |
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| T |
39993637 |
aactaactaatactactttgatttatatatg |
39993607 |
T |
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