View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16391_low_4 (Length: 454)
Name: NF16391_low_4
Description: NF16391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16391_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 124 - 430
Target Start/End: Complemental strand, 25295578 - 25295280
Alignment:
| Q |
124 |
aaatcgtataatatatgtggtttcata-gattattaaggtttcattgaaccttattttttcccttccataattgttgtgatgatgtgagtttttggaatg |
222 |
Q |
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| T |
25295578 |
aaatcgtataatatatgtggtttcataagattattaaggtttcattgaacctaattttttcccttccataattgttctgatgatgtgagtttttggaatg |
25295479 |
T |
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| Q |
223 |
tcaacgtgtcactgcaccaaagtgactat------------aataatgatatttcctttcctcaataagttaccgatacaaagttatgacacattatatg |
310 |
Q |
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| T |
25295478 |
tcaacgtgtcactgcaccaaagtgactatagaaatggcatgaagaatgatatttcctttcctcaataagttaccgatacaaagttatgacacattatatg |
25295379 |
T |
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| Q |
311 |
gttaagaatttagtcctaaactaatcatcaaacttcctttcctttccacacaattgcaatttatcccagaattattatcatccataaactaatcatcaaa |
410 |
Q |
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| T |
25295378 |
gttaagaatttagtcctaaa---------------------atttccacacaattgcaatttatcccagaattattatcatccataaactaatcatcaaa |
25295300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 25295665 - 25295602
Alignment:
| Q |
10 |
agattattaatttgagttaaacctggttgattgatataatggggtgaaattcttttagtacctc |
73 |
Q |
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| T |
25295665 |
agattattaatttgagttaaacctggtggattgatataatggggtgaaattcttttagtacctc |
25295602 |
T |
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