View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16391_low_8 (Length: 355)
Name: NF16391_low_8
Description: NF16391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16391_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 54 - 227
Target Start/End: Original strand, 32416626 - 32416800
Alignment:
| Q |
54 |
aatattagaagaaaccaaaacaaggtaactgaaaagaggaaagataaagtttcacaattatgatatttgagggactaaaaatgaaaattaagcatttatc |
153 |
Q |
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| T |
32416626 |
aatattagaagaaaccaaaacaaggtaactgaaaagaggaaagataaagtttcacaattatgatatttgagggactaaaaatgaaaattaagcatttatc |
32416725 |
T |
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| Q |
154 |
ttgaactcaatatta-ccatctaactgtttcatccaagtgaatttgtactatatggttgatgttgatgaaggtgt |
227 |
Q |
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||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32416726 |
ttgaactcaatattacccatctgactgtttcatccaagtgaatttgtactatatggttgatgttgatgaaggtgt |
32416800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 54 - 227
Target Start/End: Original strand, 32422467 - 32422641
Alignment:
| Q |
54 |
aatattagaagaaaccaaaacaaggtaactgaaaagaggaaagataaagtttcacaattatgatatttgagggactaaaaatgaaaattaagcatttatc |
153 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32422467 |
aatattagaagaaaccaaaacaaggtaactgaaaagaggaaagataaagtttcacaattatgatatttgagggactaaaaatgaaaattaagcatttatc |
32422566 |
T |
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| Q |
154 |
ttgaactcaatatta-ccatctaactgtttcatccaagtgaatttgtactatatggttgatgttgatgaaggtgt |
227 |
Q |
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||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32422567 |
ttgaactcaatattacccatctgactgtttcatccaagtgaatttgtactatatggttgatgttgatgaaggtgt |
32422641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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