View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16392_high_12 (Length: 333)
Name: NF16392_high_12
Description: NF16392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16392_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 45 - 315
Target Start/End: Complemental strand, 17505361 - 17505091
Alignment:
| Q |
45 |
aaaatgttgtaagaagagcaattttcttgagattattccaccatgtattggatacaaggcacgtaaatccatttagatgacccaccttaagctcatataa |
144 |
Q |
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| T |
17505361 |
aaaatgttgtaagaagagcaattttcttgagattattccaccgtgtattggatacaaggcacgtaaatccatttaaatgacccaccttaagctcatataa |
17505262 |
T |
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| Q |
145 |
gaatgatggaatagtcactacttgaatagtggtctacaatgcaccttgttaaccgacaaggggatggtagatgcaaaaggcaaaaaaggaatggtattgg |
244 |
Q |
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| T |
17505261 |
gaatgatggaatagtcactacttgaatagtggtctacaatgcaccttgttaaccgacaaggggatggtagatgcaaaaggcaaaaaaggaatggtattgg |
17505162 |
T |
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| Q |
245 |
acatttgaaagggatataactgtgatataggccatcgataagcacttaagtgcacatttatcatgtcggtt |
315 |
Q |
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| T |
17505161 |
acatttgaaagggatataactgtgatataggccattgataagcacttaagtgcacatttatcatgttggtt |
17505091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 17506649 - 17506614
Alignment:
| Q |
10 |
attattctattaggaatcaaatttataattatttca |
45 |
Q |
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| T |
17506649 |
attattctattaggaatcaaatttataattatttca |
17506614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 10237999 - 10237925
Alignment:
| Q |
71 |
ttgagattattccaccatgtattggatacaaggcacgtaaa-tccatttagatgacccaccttaagctcatataa |
144 |
Q |
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|||||||||||| ||| | ||||||||||| |||| |||| |||||||||||||||||| ||||||||| |||| |
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| T |
10237999 |
ttgagattattctaccgtccattggatacaaagcacataaaatccatttagatgacccacgttaagctcaaataa |
10237925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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