View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16392_high_16 (Length: 243)
Name: NF16392_high_16
Description: NF16392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16392_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 17196606 - 17196383
Alignment:
| Q |
1 |
ctcggttctaatattaaaaatgacccctaatattaaaaactagttcttcttttactagggatgaatcatgtttggatagagaggagtcacgtttgattca |
100 |
Q |
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| T |
17196606 |
ctcggttctaatattaaaaatgactcctaatattaaaaattagttgttcttttactagggatgaatcatgtttggatcaagaggagtcacgtttgattca |
17196507 |
T |
|
| Q |
101 |
atagaggttccaacaatttatggagagttttctctaggtcattcgcgtctacctctcacataatccatctgttttgagcaattggttggaaatagctaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
17196506 |
atagaggttccaacaatttatggagagttttctctaggtcattcgagtctacctctcacataatccatctgttttgagcaatttgttggaaatagctaat |
17196407 |
T |
|
| Q |
201 |
aaccagtatcttgaaaacctctaa |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
17196406 |
aaccagtatcttgaaaacctctaa |
17196383 |
T |
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