View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16392_high_2 (Length: 699)
Name: NF16392_high_2
Description: NF16392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16392_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 405
Target Start/End: Original strand, 7425482 - 7425872
Alignment:
| Q |
12 |
agaagcataggttgatggctatttgttaaacagaatctgatgtaaggtgctgtgaagnnnnnnnnaacaaatttaacgaaagttgtatcatgataatacg |
111 |
Q |
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| T |
7425482 |
agaatcataggttgatggctatttgttaaacagaatctgatgtaaggtgctgtgaagttttttttaacaaatttaacgaaagttgcattatgataatacg |
7425581 |
T |
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| Q |
112 |
ttgacatttcaactatgttggtaccacttttacnnnnnnnnnnn-------ctttgtgcggttattaatcctttaaaatctctcttaaggtattattaat |
204 |
Q |
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| T |
7425582 |
ttgacatttcaactatgttggtaccactttgacaaaaaaaaaaaaaaaaaactctgtgcggtcattaatcctttaaaatctcacttaaagtattattaat |
7425681 |
T |
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| Q |
205 |
ataaaatataaaaataaagggtgaggagaggagacataaaccaaactcatcgaaataagagtaacgaaaacgataagaaggtaaatcaaccatgtctctg |
304 |
Q |
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| T |
7425682 |
ataaaatataaaaataaaaggtgaggagaggagacataaaccaaactcatcgaaataagagtaacgaaaacgataagaaggtaaatcaa----------- |
7425770 |
T |
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| Q |
305 |
aagaaacattttcttaaacaactaagtaattgatctaacc-aactaaactattaacaaaaatgttggcatcggttagtctatcttcacaagtatttgggt |
403 |
Q |
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| T |
7425771 |
aagaaacattttcttaaacaactaagtaattgatctaaccaaactaaactattaacaaaaatgttagcatcggttagtctatcttcacaagtatttgtgt |
7425870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 465 - 683
Target Start/End: Original strand, 7425883 - 7426110
Alignment:
| Q |
465 |
ggtcaaaattgaaaatgtgtgatgttgcatatctttttactagtctagtgg-----tgttttcctcagttgctgaatgcatatcatgattgaa-tggtag |
558 |
Q |
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| T |
7425883 |
ggtcaaaattgaaaatgtgtgatgttgcatatctttttactagtctagtggagtggtgttttcctcagttgctgaatgcatatcatgattgaaatggtag |
7425982 |
T |
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| Q |
559 |
accaattcgaaggtcggtttgggctggtcccttatttaagtggccatcattatcaattaatttgtttctaacttttcaagaataatggaataaaactgtg |
658 |
Q |
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| T |
7425983 |
accaattcgaagatcggtttgggctggtcccttatttaagtggccatcattatcaatttatttgtttttaacttttcaagaataatggaataaaactgtg |
7426082 |
T |
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| Q |
659 |
agt---aagaatcactaaatcacacatt |
683 |
Q |
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| T |
7426083 |
agtaagaagaatcactaaatcacacatt |
7426110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 29493418 - 29493361
Alignment:
| Q |
237 |
gacataaaccaaactcatcgaaataagagtaacgaaaacgataagaaggtaaatcaac |
294 |
Q |
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| T |
29493418 |
gacataaaccaaactcatcaaaacaagataaacaaaaacgataagaaagtaagtcaac |
29493361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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