View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16392_high_3 (Length: 633)
Name: NF16392_high_3
Description: NF16392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16392_high_3 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 548; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 18 - 626
Target Start/End: Original strand, 53524836 - 53525445
Alignment:
| Q |
18 |
acatgtgtacacaggtattacacaaaaactcatacctattggtatggaggtaatatcagcaattctccgttcaacattctgcacaattttgtcttttcct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53524836 |
acatgtgtacacaggtattacacaaaaactcatacctattggtatggaggtaatatcagcaattctccgttcaacattctgcacaattttgtcttttcct |
53524935 |
T |
|
| Q |
118 |
ctctccagaaatgttcctgaactagttcgaacgctacatgcatgggatataacaaaagtaatgcattaccgctcgacactaagaactcaagacaatgtat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53524936 |
ctctccagaaatgttcctgaactagttcgaacgctacatgcatgggatataacaaaagtaatgcattaccgctcgacactaagaactcaagacaatgtat |
53525035 |
T |
|
| Q |
218 |
atggnnnnnnncacaagcataggcaaacctgtttagtataccctgtccggttacgccatcgacaacaagtgacctttgcatgaaaggcttggcaagattg |
317 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53525036 |
atggaaaaaaacacaagcataggcaaacctgtttagtataccctgtccggttacgccatcgacaacaagtgacctttgcatgaaaggcttggcaagattg |
53525135 |
T |
|
| Q |
318 |
atcaaatgctcacattcttcttttgactgttcaaaatgataggcagaatggacatgttaatgcaatatacattccaacagtttactaccacaagaattca |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53525136 |
atcaaatgctcacattcttcttttgactgttcaaaatgataggcagaatggacatgttaatgcaatatacattccaacagtttactaccacaagaattca |
53525235 |
T |
|
| Q |
418 |
aagaagtaaactaagatctctcccatttc-nnnnnnnnnnnctaagatatccactcaaactccggagtcttttagaaaattcaagttagttcaagtttac |
516 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53525236 |
aagaagtaaactaagatctctcccatttcaaaaaaaaaaaactaagatatccactcaaactccggagtcttttagaaaattcaagttagttcaagtttac |
53525335 |
T |
|
| Q |
517 |
tgcaatctgaatattccatgtatgaatacctagattttcttttatattaaccacccagaaaaccctctatcttcgtacaatttaatttcccatgagccta |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53525336 |
tgcaatctgaatattccatgtatgaatacctagattttcttttatattaaccacccagaaaaccctctatcttcgtacaatttaatttcccatgagccta |
53525435 |
T |
|
| Q |
617 |
gcctatgctt |
626 |
Q |
| |
|
|||||||||| |
|
|
| T |
53525436 |
gcctatgctt |
53525445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 41 - 401
Target Start/End: Original strand, 53510744 - 53511099
Alignment:
| Q |
41 |
aaaaactcatacctattggtatggaggtaatatcagcaattctccgttcaacattctgcacaattttgtcttttcctctctccagaaatgttcctgaact |
140 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||| ||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
53510744 |
aaaaactcatacctactggtatggaggtaatatcagcaattctctgttcaatattctggacaattttgtcctttcctctctccagaaaccttcctgaact |
53510843 |
T |
|
| Q |
141 |
agttcgaacgctacatgcatgggatataacaaaagtaatgcattaccgct-cgacactaagaactcaagacaatgtatatggnnnnnnncacaagcatag |
239 |
Q |
| |
|
||||||| ||||||||||| |||||||| ||||||||||||||||| || ||||||| ||||||| |||||| ||| | || ||| |
|
|
| T |
53510844 |
agttcgagcgctacatgcaggggatatattaaaagtaatgcattaccactaagacactattctctcaagaaaatgtacatg------aaaaaaataatat |
53510937 |
T |
|
| Q |
240 |
gcaaacctgtttagtataccctgtccggttacgccatcgacaacaagtgacctttgcatgaaaggcttggcaagattgatcaaatgctcacattcttctt |
339 |
Q |
| |
|
||||||||| || | |||||| ||| || | |||||| |||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53510938 |
gcaaacctgctttctctaccctttccagtcaagccatcaacaacaagcgatcttgtcatgaaaggcttggcaagattgatcaaatgctcacattcttctt |
53511037 |
T |
|
| Q |
340 |
ttgactgttcaaaatgataggcagaatggacatgttaatgcaatatacattccaacagttta |
401 |
Q |
| |
|
||||||||||||||||||||| | | ||||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
53511038 |
ttgactgttcaaaatgataggaaaagtggacattttaatacaatataaattccaacagttta |
53511099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 229 - 401
Target Start/End: Original strand, 53514616 - 53514788
Alignment:
| Q |
229 |
cacaagcataggcaaacctgtttagtataccctgtccggttacgccatcgacaacaagtgacctttgcatgaaaggcttggcaagattgatcaaatgctc |
328 |
Q |
| |
|
|||||||||||||||||||| || | || ||| ||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
53514616 |
cacaagcataggcaaacctgctttctttaacctctccagttacgccatcgacaacaagtgatcttgccatgaaaggcttggcaagattgatcaaatgctc |
53514715 |
T |
|
| Q |
329 |
acattcttcttttgactgttcaaaatgataggcagaatggacatgttaatgcaatatacattccaacagttta |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| | ||||| ||||||| |||||||||||||| |
|
|
| T |
53514716 |
acattcttcttttgactgttcaaaatgataggcaaaatggaggttttaatacaatatagattccaacagttta |
53514788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 229 - 439
Target Start/End: Original strand, 20197244 - 20197458
Alignment:
| Q |
229 |
cacaagcataggcaaacctgtttagtataccctgtccggttacgccatcgacaacaagtgacctttgcatgaaaggcttggcaagattgatcaaatgctc |
328 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||| |||| || |||| |||| || | |||||||| |||| |||||||||||||| |
|
|
| T |
20197244 |
cacaagcataggcaaacctgttttctataccctttccggttcttttatcggaaatgcgtgatctttccaagtaaggcttgccaagtttgatcaaatgctc |
20197343 |
T |
|
| Q |
329 |
acattcttcttttgactgttcaaaatgataggcagaatggacatgttaatgcaatatac----attccaacagtttactaccacaagaattcaaagaagt |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||| |||||||||||||| ||||||||||||| |||||| | |
|
|
| T |
20197344 |
acattcttcttttgactgttcaaaatgataggcataatggacattttaatacaatatactcaaattccaacagtttagtaccacaagaattgaaagaact |
20197443 |
T |
|
| Q |
425 |
aaactaagatctctc |
439 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
20197444 |
aaactaagatttctc |
20197458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 37 - 196
Target Start/End: Original strand, 53514389 - 53514549
Alignment:
| Q |
37 |
acacaaaaactcatacctattggtatggaggtaatatcagcaattctccgttcaacattctgcacaattttgtcttttcctctctccagaaatgttcctg |
136 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||| |||||||| |||||| |
|
|
| T |
53514389 |
acacaaatactcatacctattggtacggaggtaatatcagcaattctccgttcaatattctggacaattttgtcctttcctctatccagaaacattcctg |
53514488 |
T |
|
| Q |
137 |
aactagttcgaacgct--acatgcatgggatataacaaaagtaatgcattaccgctcgacac |
196 |
Q |
| |
|
||||||||||| ||| ||| ||| |||||||| ||||||| |||||||||| || ||||| |
|
|
| T |
53514489 |
aactagttcgagagctacacaggcaggggatatatcaaaagt-atgcattaccactggacac |
53514549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 38 - 198
Target Start/End: Original strand, 53548433 - 53548593
Alignment:
| Q |
38 |
cacaaaaactcatacctattggtatggaggtaatatcagcaattctccgttcaacattctgcacaattttgtcttttcctctctccagaaatgttcctga |
137 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| |||||||||||||| ||||| |||||| | ||||||||| |||||||||| |||||| ||||||| |
|
|
| T |
53548433 |
cacaaaaactcatacctactggtatgaaggtaaaatcagcaattctcctttcaatattctggataattttgtcctttcctctcttcagaaacattcctga |
53548532 |
T |
|
| Q |
138 |
actagttcgaacgctacatgcatgggatataacaaaagtaatgcattaccgctcgacacta |
198 |
Q |
| |
|
|||||||||||| ||||| | | |||||||| | | |||||||||||||| || ||||||| |
|
|
| T |
53548533 |
actagttcgaaccctacaggaaggggatatatctagagtaatgcattaccactagacacta |
53548593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 299 - 445
Target Start/End: Original strand, 53548735 - 53548883
Alignment:
| Q |
299 |
gaaaggcttggcaagattgatcaaatgctcacattcttcttttgactgttcaaaatgataggcagaatggacatgttaatgcaatatacattccaacagt |
398 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |||| ||||| ||||| ||||| ||||||| ||||||||||| |
|
|
| T |
53548735 |
gaaaggcttggccagattgatcaaatgctcacattcttctttggactgttcacaatggtaggaagaattgacattttaatacaatataaattccaacagt |
53548834 |
T |
|
| Q |
399 |
ttacta--ccacaagaattcaaagaagtaaactaagatctctcccattt |
445 |
Q |
| |
|
|||||| ||||||| ||||||||| |||||||| || |||| ||||| |
|
|
| T |
53548835 |
ttactaacacacaagacttcaaagaaataaactaatatgtctctcattt |
53548883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 504 - 626
Target Start/End: Original strand, 53511155 - 53511283
Alignment:
| Q |
504 |
agttcaagtttactgcaatctgaatattccatgtatgaatac-----ctagattttcttttat-attaaccacccagaaaaccctctatcttcgtacaat |
597 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||| ||||| |||||||||| ||| | | |
|
|
| T |
53511155 |
agttcaagtttcctgcaatctgaatattccatgtatgaatatgaatactagattttcttttatcattaactaccatgaaaaacctctatctttgtatagt |
53511254 |
T |
|
| Q |
598 |
ttaatttcccatgagcctagcctatgctt |
626 |
Q |
| |
|
||||||| |||||| |||||||||||||| |
|
|
| T |
53511255 |
ttaattttccatgaccctagcctatgctt |
53511283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 504 - 626
Target Start/End: Original strand, 53548931 - 53549053
Alignment:
| Q |
504 |
agttcaagtttactgcaatctgaatattccatgtatgaatacctagattttcttttat------attaaccacccagaaaaccctctatcttcgtacaat |
597 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||||||| || || |||||||||||| | ||||||||||| |||||| |
|
|
| T |
53548931 |
agttcaagtttaccataatctgaatattccatgta------cctagattttctttaatcacgacatgaaccacccagaacaacctctatcttcatacaat |
53549024 |
T |
|
| Q |
598 |
ttaatttcccatgagcctagcctatgctt |
626 |
Q |
| |
|
||| ||| ||||||||||||||||||||| |
|
|
| T |
53549025 |
ttagttttccatgagcctagcctatgctt |
53549053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 504 - 626
Target Start/End: Original strand, 53514856 - 53514984
Alignment:
| Q |
504 |
agttcaagtttactgcaatctgaatattccatgtatgaatac-----ctagattttcttttat-attaaccacccagaaaaccctctatcttcgtacaat |
597 |
Q |
| |
|
|||| |||||| |||||||||||||||| | ||||||||| |||||||||||||||| | |||||||| ||||| ||||||| || || ||| |
|
|
| T |
53514856 |
agtttaagtttcctgcaatctgaatatttcgtgtatgaatgtgaatactagattttcttttatcactaaccaccatgaaaaacctctattgtcatataat |
53514955 |
T |
|
| Q |
598 |
ttaatttcccatgagcctagcctatgctt |
626 |
Q |
| |
|
||||||| ||||||||||||||||||||| |
|
|
| T |
53514956 |
ttaattttccatgagcctagcctatgctt |
53514984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 534 - 626
Target Start/End: Original strand, 20197467 - 20197562
Alignment:
| Q |
534 |
atgtatgaatacctagattttcttttatattaaccacccagaaaaccctcta----tcttcgtacaatttaatttcccatgagcctagcctatgctt |
626 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||| ||| |||||| |||| || || ||||||| |||||||| |||||||||||| |
|
|
| T |
20197467 |
atgtatgaatacctagattttctgttat-ttaaccacccaggaaaacctctaacttacttcatataacttaattttccatgagcatagcctatgctt |
20197562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 305 - 431
Target Start/End: Complemental strand, 16608492 - 16608366
Alignment:
| Q |
305 |
cttggcaagattgatcaaatgctcacattcttcttttgactgttcaaaatgataggcagaatggacatgttaatgcaatatacattccaacagtttacta |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||| ||| ||||| ||||| ||||||| |||||||||| |||||| |
|
|
| T |
16608492 |
cttggcaagattgatcaaatgctcacattcttattttgattgtacaaaatgataggcataatagacattttaatacaatataaattccaacagattacta |
16608393 |
T |
|
| Q |
405 |
ccacaagaattcaaagaagtaaactaa |
431 |
Q |
| |
|
||| ||||||||||||||||||||||| |
|
|
| T |
16608392 |
ccataagaattcaaagaagtaaactaa |
16608366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 519 - 576
Target Start/End: Complemental strand, 16608278 - 16608218
Alignment:
| Q |
519 |
caatctgaatattccatgtatga--atacctagattttcttttat-attaaccacccagaa |
576 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16608278 |
caatctgaatattccatgtatgaatatacctagattttcttttatcattaaccacccagaa |
16608218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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