View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16392_high_4 (Length: 521)
Name: NF16392_high_4
Description: NF16392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16392_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 162 - 517
Target Start/End: Original strand, 1029533 - 1029870
Alignment:
| Q |
162 |
attgaggtgaaaattcttgatttatttgtcatttctttggctcccactttttcttcagtgtaggagtatgtaaagttttacaacccacaaaatttcaaca |
261 |
Q |
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| T |
1029533 |
attgaggtgaaaattcttgatttatttgtcatttctttggctcccactttttcttcagtgtaggagtatgtaaagttttacaacccacaaaatttcaaca |
1029632 |
T |
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| Q |
262 |
tatttcatttgattacttcatccctattccttttttgtctcgagtcccataaatgactttattagcttccaacatctcttcacattggatatacttattg |
361 |
Q |
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| T |
1029633 |
tatttcatttgattacttcatccctattccttttttgtctcgagtcccataaatgactttattagcttccaacatctcttcacattggatatacttattg |
1029732 |
T |
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| Q |
362 |
gccctttctagtagatggttgaagtcatgggttgctttgaggccaatactctcggtaaacttggtgtccttcaagagtcgtgaacgaagtagatttgtct |
461 |
Q |
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| T |
1029733 |
gccctttctagtagatggttgaagtcatgggttgctttgaggccaatactctcggtaaacttggtgtccttcaagagtc---------------ttgtct |
1029817 |
T |
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| Q |
462 |
tcatcttgtcatcggcgtcgtccttcacttgtacgacctctttgttgaatctctca |
517 |
Q |
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| T |
1029818 |
tcatcttgtcatcgg---cgtccttcactcgtacgacctctttgttgaatctctca |
1029870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 17 - 289
Target Start/End: Original strand, 1012160 - 1012434
Alignment:
| Q |
17 |
aattatcggttgcgatgtagcctcaattccagttgcattgtggtttcgtcaacaaaactgtcatgttatgactcaaatagccgtaacagacctttattta |
116 |
Q |
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| T |
1012160 |
aattgtcggttatgatgtagcctcaattgcagttgcattgtggtttcgtcaacaaaaccatcattttatgactcaaatagccgtagcagacctttattta |
1012259 |
T |
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| Q |
117 |
acaccctaaggattgttcttttgagactac--actgatcatgatgatattgaggtgaaaattcttgatttatttgtcatttctttggctcccactttttc |
214 |
Q |
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| T |
1012260 |
ttacccgaaggattgttcttttgtgactactaactcatcatgatgatattcaggtgaaaattcttggtttatttgtcatttctttggctccaattttttc |
1012359 |
T |
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| Q |
215 |
ttcagtgtaggagtatgtaaagttttacaacccacaaaatttcaacatatttcatttgattacttcatccctatt |
289 |
Q |
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| T |
1012360 |
ttcactgtaggagtatgtaaagttttacaacccacaaaatttcaacatatttcatttgattactacatctctatt |
1012434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 991797 - 991920
Alignment:
| Q |
22 |
tcggttgcgatgtagcctcaattccagttgcattgtggtttcgtcaac-aaaactgtcatgttatgactcaaatagccgtaacagacctttatttaacac |
120 |
Q |
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| T |
991797 |
tcggttgccatgtagtctcaattccagttgcattgtggtttcgacaacaaaaaccgtcatgttatgact-aaatcgccgtagcagaccttgatttaacac |
991895 |
T |
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| Q |
121 |
cctaaggattgttcttttgagacta |
145 |
Q |
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||||| ||||||||| ||||||||| |
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| T |
991896 |
cctaatgattgttctattgagacta |
991920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 1029471 - 1029534
Alignment:
| Q |
17 |
aattatcggttgcgatgtagcctcaattccagttgcattgtggtttcgtcaacaaaactgtcat |
80 |
Q |
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| T |
1029471 |
aattgtcggttgcgatgtagcctcaattccagttgcattgtggtttcgtcaacaaaaccgtcat |
1029534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 1029415 - 1029454
Alignment:
| Q |
17 |
aattatcggttgcgatgtagcctcaattccagttgcattg |
56 |
Q |
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| T |
1029415 |
aattatcggttgcgatgtagtctcaattccagttgcattg |
1029454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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