View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16392_high_6 (Length: 436)
Name: NF16392_high_6
Description: NF16392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16392_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 394
Target Start/End: Original strand, 1913985 - 1914352
Alignment:
| Q |
18 |
caatttatgtttttaatttatgcggcaattctaaacgtcttgataacctagatactaagttggaatttagttcgaattgggttgtggtggcaatattaag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||| |
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| T |
1913985 |
caatttatgtttttaatttatgcggcaattctaaacgtcttgataacctagatactaagttggaagtgagtt-----------gtggtggcaatattaag |
1914073 |
T |
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| Q |
118 |
ttttggattgatgtatggagtggtgattatttggttgtattgattcgaaatagtttctccacaacaaatgaactggacgagcaatttaaaaca-gagtta |
216 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
1914074 |
ttttggattgatgcatggagtggtgattatttggttgtattgattcgaaatagtttctccacaacaaatgaactggacgagcaatttagaacacgagtta |
1914173 |
T |
|
| Q |
217 |
aattcttaaaaggagttatt-gtggataggtttacttgtatcaagccttaagttgtagatggaagaaacgtgaataaattttattatgtaaaacggaaaa |
315 |
Q |
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|||||||||||| ||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1914174 |
aattcttaaaagaagttattagttgataggtttacgtgtatcaagccttaagttgtagatggaagaaacgtgaataaattttattatgtaaaacggaaaa |
1914273 |
T |
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| Q |
316 |
ttgtataaggtacaagtgtgcaaaatggaaaaagtctattaagctttgggtgagattcatacaacattctttcaatgtt |
394 |
Q |
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| T |
1914274 |
ttgtataaggtacaagtgtgcaaaatggaaaaagtctattaagctttgggtgagattcatacaacattctttcaatgtt |
1914352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 30312187 - 30312231
Alignment:
| Q |
161 |
ttcgaaatagtttctccacaacaaatgaactggacgagcaattta |
205 |
Q |
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| T |
30312187 |
ttcgaaatattttctcaacgacaaatgaactcgacgagcaattta |
30312231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 141; Significance: 9e-74; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 211 - 394
Target Start/End: Original strand, 17485019 - 17485202
Alignment:
| Q |
211 |
gagttaaattcttaaaaggagttattgtg-gataggtttacttgtatcaagccttaagttgtagatggaagaaacgtgaataaattttattatgtaaaac |
309 |
Q |
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|||||||||||||| ||||||||||| | |||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17485019 |
gagttaaattcttataaggagttattatttgataggtttatgtgtaccaagccttaagttgtagatggaagaaacgtgaataaaatttattatgtaaaac |
17485118 |
T |
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| Q |
310 |
ggaaaattgtataaggtacaagtgtgcaaaatggaaaaagtctattaagctttgggtgagattcatacaacattctttcaatgtt |
394 |
Q |
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| T |
17485119 |
ggaaaattgtataaggtacaagtgtgcaaaatggaaaaagtctattaagctttgggtgagatt-atacaacattctttcaatgtt |
17485202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 211 - 394
Target Start/End: Complemental strand, 17568195 - 17568012
Alignment:
| Q |
211 |
gagttaaattcttaaaaggagttattgtg-gataggtttacttgtatcaagccttaagttgtagatggaagaaacgtgaataaattttattatgtaaaac |
309 |
Q |
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|||||||||||||| ||||||||||| | |||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17568195 |
gagttaaattcttataaggagttattatttgataggtttatgtgtaccaagccttaagttgtagatggaagaaacgtgaataaaatttattatgtaaaac |
17568096 |
T |
|
| Q |
310 |
ggaaaattgtataaggtacaagtgtgcaaaatggaaaaagtctattaagctttgggtgagattcatacaacattctttcaatgtt |
394 |
Q |
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| T |
17568095 |
ggaaaattgtataaggtacaagtgtgcaaaatggaaaaagtctattaagctttgggtgagatt-atacaacattctttcaatgtt |
17568012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 17480422 - 17480577
Alignment:
| Q |
18 |
caatttatgtttttaatttatgcggcaattctaaacgtcttgataacctagatactaagttggaatttagttcgaattgggttgtggtggcaatattaag |
117 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||| |||| |||||||||| |
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| T |
17480422 |
caatttatgttttaaatttatgcggcaattttaaacgtcttgataacctagatactaagttggaatttaattggaattgggttgcggtgacaatattaag |
17480521 |
T |
|
| Q |
118 |
ttttggattgatgtatggagtggtgattatttggttgtattgattcgaaatagttt |
173 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17480522 |
ttttggattgatgcatggagtggtgattatttggttgtattgattcaaaatagttt |
17480577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 17484859 - 17485014
Alignment:
| Q |
18 |
caatttatgtttttaatttatgcggcaattctaaacgtcttgataacctagatactaagttggaatttagttcgaattgggttgtggtggcaatattaag |
117 |
Q |
| |
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||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||| |||| |||||||||| |
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| T |
17484859 |
caatttatgttttaaatttatgcggcaattttaaacgtcttgataacctagatactaagttggaatttaattggaattgggttgcggtgacaatattaag |
17484958 |
T |
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| Q |
118 |
ttttggattgatgtatggagtggtgattatttggttgtattgattcgaaatagttt |
173 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17484959 |
ttttggattgatgcatggagtggtgattatttggttgtattgattcaaaatagttt |
17485014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 17568355 - 17568200
Alignment:
| Q |
18 |
caatttatgtttttaatttatgcggcaattctaaacgtcttgataacctagatactaagttggaatttagttcgaattgggttgtggtggcaatattaag |
117 |
Q |
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||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||| |||| |||||||||| |
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| T |
17568355 |
caatttatgttttaaatttatgcggcaattttaaacgtcttgataacctagatactaagttggaatttaattggaattgggttgcggtgacaatattaag |
17568256 |
T |
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| Q |
118 |
ttttggattgatgtatggagtggtgattatttggttgtattgattcgaaatagttt |
173 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17568255 |
ttttggattgatgcatggagtggtgattatttggttgtattgattcaaaatagttt |
17568200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 17572792 - 17572637
Alignment:
| Q |
18 |
caatttatgtttttaatttatgcggcaattctaaacgtcttgataacctagatactaagttggaatttagttcgaattgggttgtggtggcaatattaag |
117 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||| |||| |||||||||| |
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| T |
17572792 |
caatttatgttttaaatttatgcggcaattttaaacgtcttgataacctagatactaagttggaatttaattggaattgggttgcggtgacaatattaag |
17572693 |
T |
|
| Q |
118 |
ttttggattgatgtatggagtggtgattatttggttgtattgattcgaaatagttt |
173 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17572692 |
ttttggattgatgcatggagtggtgattatttggttgtattgattcaaaatagttt |
17572637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 211 - 302
Target Start/End: Original strand, 17480582 - 17480674
Alignment:
| Q |
211 |
gagttaaattcttaaaaggagttattgtg-gataggtttacttgtatcaagccttaagttgtagatggaagaaacgtgaataaattttattat |
302 |
Q |
| |
|
|||||||||||||| ||||||||||| | |||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
17480582 |
gagttaaattcttataaggagttattatttgataggtttatgtgtaccaagccttaagttgtagatggaagaaacgtgaataaaatttattat |
17480674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 211 - 302
Target Start/End: Complemental strand, 17572632 - 17572540
Alignment:
| Q |
211 |
gagttaaattcttaaaaggagttattgtg-gataggtttacttgtatcaagccttaagttgtagatggaagaaacgtgaataaattttattat |
302 |
Q |
| |
|
|||||||||||||| ||||||||||| | |||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
17572632 |
gagttaaattcttataaggagttattatttgataggtttatgtgtaccaagccttaagttgtagatggaagaaacgtgaataaaatttattat |
17572540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 37059600 - 37059645
Alignment:
| Q |
157 |
ttgattcgaaatagtttctccacaacaaatgaactggacgagcaat |
202 |
Q |
| |
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||||||| ||||||||||||||||||||||||| || |||| |||| |
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| T |
37059600 |
ttgattcaaaatagtttctccacaacaaatgaattgaacgaacaat |
37059645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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