View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16392_low_10 (Length: 400)
Name: NF16392_low_10
Description: NF16392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16392_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 10068192 - 10068583
Alignment:
| Q |
1 |
tcacagggatgtaaaagaataatggatccatagatactgccatcacacatgttataacaaagatcttgttccatttctgaagtagtggaccttgtggatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10068192 |
tcacagggatgtaaaagaataatggatccatagatactgccatcacacatgttataacaaagatcttgttccatttctgaagtagtggaccttgtggatc |
10068291 |
T |
|
| Q |
101 |
aagaacactacatctagaagctggtttttccaatgattcattannnnnnnctggagtaacacttggtttagattttcttttttcaaatccatcaattgaa |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10068292 |
aagaacactacacctagaagctggtttttccaatgattcattatttttttctggagtaacacttggtttagattttcttttttcaaatccatcaattgaa |
10068391 |
T |
|
| Q |
201 |
gaatcatattgtgaaaaattaaaagatgatgattctgacttccaatcttcaaatctggacataaatataaactaagttaaggaacatatcatattttttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10068392 |
gaatcatattgtgaaaaattaaaagatgatgattctgacttccaatcttcaaatctggacataaatataaactaagttaaggaacatatcatattttttg |
10068491 |
T |
|
| Q |
301 |
tcacatgtcatagaaaaagttcatgacttaaaattgaaaaataatcaactaggaaaaccatagatttatgcttagtttatatactatatgat |
392 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10068492 |
tcacatgtcatagaaaaagctcatgacttaaaattgaaaaataatcaactaggaaaaccatagatttatgcttagtttatatactatatgat |
10068583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 48464151 - 48464055
Alignment:
| Q |
9 |
atgtaaaagaataatggatccatagatactgccatcacacatgttataacaaagatcttgttccatttctgaagtagtggaccttgtggatcaagaa |
105 |
Q |
| |
|
||||||||||| || || |||| ||| | ||||| ||||||||| || |||||||| ||||||||||||||||| | || || ||||||||||||| |
|
|
| T |
48464151 |
atgtaaaagaaaaaagggtccacagaaattgccagcacacatgtgattacaaagattttgttccatttctgaagcataggcccctgtggatcaagaa |
48464055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University