View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16392_low_12 (Length: 361)
Name: NF16392_low_12
Description: NF16392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16392_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 9e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 78 - 346
Target Start/End: Complemental strand, 21549885 - 21549620
Alignment:
| Q |
78 |
atccatggcaggtagattcctgcaaaaggaatgcataattaagggttaggggcataccggtgtgattacatataatnnnnnnnnnnnnnnnnngtatatg |
177 |
Q |
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| T |
21549885 |
atccatggcaggtagattcctgcaaaaggaatgcataattaagggttaggggcataccgatgtgattaaatataatgcagcagcagcaac---gtatatg |
21549789 |
T |
|
| Q |
178 |
tatggtaaaatgaaaagatggatatgttgttatgattactaaccataaccatggcggagtgtattagannnnnnnaatgaaacactctttgacaacagga |
277 |
Q |
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| T |
21549788 |
tatggtaaaatgaaaagatggatatgttgttatgattactaaccataaccatggcggattgtattagatttttttaatgaaacactctttgacaacagga |
21549689 |
T |
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| Q |
278 |
tctttatctttacgctgcaatacatgagtctggaaagttgttagagcaggtcttcctccctttttctgt |
346 |
Q |
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| T |
21549688 |
tctttatctttacgctgcgatacatgagtctggaaagttgttagagcaggtcttcctccctttttctgt |
21549620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 20362159 - 20361929
Alignment:
| Q |
1 |
cataaagtcataaacacccatcatatttatt-aattaactacacctagaa----gtctttccaaggcaaccaaaacaagcatatccatggcaggtagatt |
95 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
20362159 |
cataaagtcataaacacccatcatatttatttaattaactacacctacaaacaagtctttccagcgcaaccaaaacaagcatatccatggcaggtagatt |
20362060 |
T |
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| Q |
96 |
cctgcaaaaggaatgcataattaagggttaggggcataccggtgtgattacatataatnnnnnnnnnnnnnnnnngtatatgtatggtaaaatgaaaaga |
195 |
Q |
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| T |
20362059 |
cctgcaaaaggaatacataatcaagggttaggggcataccggtgtgattacatataat---gcagcagcagcaaagtatatgtacggtaaaatgaaaaga |
20361963 |
T |
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| Q |
196 |
tggatatgttgttatgattactaaccataaccat |
229 |
Q |
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||| |||||||||||||||||||||||||||||| |
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| T |
20361962 |
tgggtatgttgttatgattactaaccataaccat |
20361929 |
T |
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