View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16392_low_16 (Length: 273)
Name: NF16392_low_16
Description: NF16392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16392_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 263
Target Start/End: Original strand, 7086518 - 7086765
Alignment:
| Q |
16 |
cacatactttccaaagcattttccacaaaggctagctttctccttacagaagcatttaccagactaatagcaatcactcctattacaatgacaatgatag |
115 |
Q |
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| T |
7086518 |
cacatactttccaaagcattttccacaaatgctagctttctccttacggaagcatttaccagactaatagcaatcactcctattacaatgacaatgatag |
7086617 |
T |
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| Q |
116 |
ctgaaatcgctataatagctgaaatactaaggaacctgtggtgatgaattggactactagactcagatgattcatttcttgggattcgaggattcatttg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7086618 |
ctgaaatcgctataatagctgaaatactaaggaacctgtggtgatgaattggactactagactcagatgattcatttcttgggattcgaggattcatttg |
7086717 |
T |
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| Q |
216 |
atcgttatagccatgtggatcaagtactagaggttttggtacattcat |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7086718 |
atcgttatagccatgtggatcaagtactagaggttttggtacattcat |
7086765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 263
Target Start/End: Complemental strand, 7035423 - 7035176
Alignment:
| Q |
16 |
cacatactttccaaagcattttccacaaaggctagctttctccttacagaagcatttaccagactaatagcaatcactcctattacaatgacaatgatag |
115 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7035423 |
cacatgctttccaaagcattttccacaaatgctagctttctccttacagaagcatttaccagactaatagcaatcactcctattacaatgacaatagaag |
7035324 |
T |
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| Q |
116 |
ctgaaatcgctataatagctgaaatactaaggaacctgtggtgatgaattggactactagactcagatgattcatttcttgggattcgaggattcatttg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7035323 |
ctgaaatcgctataatagctgaaatactaaggaacctgtggtgatgaattggactactagactcagatgattcatttcttgggattcgaggatccatttg |
7035224 |
T |
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| Q |
216 |
atcgttatagccatgtggatcaagtactagaggttttggtacattcat |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7035223 |
atcgttatagccatgtggatcaagtactagaggttttggtacattcat |
7035176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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