View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16392_low_17 (Length: 261)
Name: NF16392_low_17
Description: NF16392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16392_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 4243354 - 4243598
Alignment:
| Q |
1 |
tataattcacacataatccaccatgtcttaaagagcaatttgacaacactgacgcatggagaacatgaaatgaagtttccccgttccattgtcttctctt |
100 |
Q |
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| T |
4243354 |
tataattcacacataatccaccatgtcgtaa-gagcaatttgacaacactaacacatggagaacatgaaatgaagtttccccgttccattgtcttctctt |
4243452 |
T |
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| Q |
101 |
ttgttatgctatctttgtatttttgttgttcaatttttaatattcattatactctccttgtaacaaaataaaagccaaaaggatttagaaatttaaatgt |
200 |
Q |
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| T |
4243453 |
tttttatgctatctttgtatttttgttgttcaatttttaatattcattatactctccttgtaacaaaataaaagccaaaaggatttagaaatttaaatgt |
4243552 |
T |
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| Q |
201 |
ttttagactaaaaacattgaactttttagattcattatacgtgtat |
246 |
Q |
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| T |
4243553 |
ttttagactaaaaacattgaactttttagattcattatacgtgtat |
4243598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 184
Target Start/End: Original strand, 4250501 - 4250680
Alignment:
| Q |
7 |
tcacacataatccaccatgtcttaaagagcaatttgacaacactgacgcatggagaacatgaaatgaagtttccccgttccattgtcttctcttttgtta |
106 |
Q |
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| T |
4250501 |
tcacacataatccaccgtgtcttaa-gcgcaatttgacgacacggacacgtggagagcatgaaatgaattttccgcgttccattgtattctcttttgttc |
4250599 |
T |
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| Q |
107 |
tgctatctttgtatttt---tgttgttcaatttttaatattcattatactctccttgtaacaaaataaaagccaaaaggat |
184 |
Q |
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| T |
4250600 |
tacggtgtttgtattttttctttctttcaatttttaatattcactatactcctcttgtaacaaaataaaagtcaaaaggat |
4250680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 3410828 - 3410736
Alignment:
| Q |
126 |
ttgttcaatttttaatattcattatactctccttgtaacaaaataaaagccaaaaggatttagaaatttaaatgtttttagactaaaaacatt |
218 |
Q |
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| T |
3410828 |
ttgttcaatttttaatattcactatactccccatgtgataaaataaaagtaaaagggatccaaaaaattaagtgtttttagactaaatacatt |
3410736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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