View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16392_low_19 (Length: 243)

Name: NF16392_low_19
Description: NF16392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16392_low_19
NF16392_low_19
[»] chr7 (16 HSPs)
chr7 (84-219)||(4784027-4784162)
chr7 (1-206)||(4636548-4636753)
chr7 (84-219)||(4816456-4816591)
chr7 (84-211)||(4863690-4863817)
chr7 (46-136)||(4712350-4712437)
chr7 (89-211)||(4630700-4630822)
chr7 (55-124)||(4846299-4846365)
chr7 (75-124)||(4643445-4643494)
chr7 (158-211)||(4846215-4846268)
chr7 (75-135)||(4672435-4672495)
chr7 (164-211)||(4697390-4697437)
chr7 (75-121)||(4666694-4666740)
chr7 (89-135)||(4697466-4697512)
chr7 (161-203)||(4647378-4647420)
chr7 (166-211)||(4672526-4672571)
chr7 (154-206)||(4661636-4661688)
[»] chr4 (1 HSPs)
chr4 (75-132)||(18926021-18926078)


Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 84 - 219
Target Start/End: Complemental strand, 4784162 - 4784027
Alignment:
Q  84 ttatatttatcacttattttcaaaatctcgattccattcaacgtgacatcacgatacaccgtaggcatagattttggtaatcgttgtagcttgatcgaaa 183  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  4784162 ttatttttatcacttattttcaaaatctcaattccattcaacgtgacatcacgatataccgtaggcataggttttggtaatcgttgtagcttgatcgaaa 4784063  T
Q  184 gattaactttttcaatttgagagcttccgccttgag 219  Q
    ||||||||||||||||||||||||||||||||||||    
T  4784062 gattaactttttcaatttgagagcttccgccttgag 4784027  T

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Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 4636548 - 4636753
Alignment:
Q  1 ctatgactatggttgacttcttggactttgattttttagatgaaagtataatgtgtttgttgggattcaaaccagcgagattgttatatttatcacttat 100  Q
    |||||||||  ||||||||||||||||||  ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4636548 ctatgactacagttgacttcttggacttttgtttttgagatgatagtataatgtgtttgttgggattcaaaccagcgagattgttatatttatcactaat 4636647  T
Q  101 tttcaaaatctcgattccattcaacgtgacatcacgatacaccgtaggcatagattttggtaatcgttgtagcttgatcgaaagattaactttttcaatt 200  Q
    ||| ||||||||||||||||| |   | ||||||||||| || |||||||| | || |||||||||||| |||||||| ||||||| |||| ||||||||    
T  4636648 tttgaaaatctcgattccattaagaataacatcacgatatactgtaggcatgggttgtggtaatcgttgaagcttgattgaaagataaactctttcaatt 4636747  T
Q  201 tgagag 206  Q
    ||||||    
T  4636748 tgagag 4636753  T

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Target: chr7; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 84 - 219
Target Start/End: Complemental strand, 4816591 - 4816456
Alignment:
Q  84 ttatatttatcacttattttcaaaatctcgattccattcaacgtgacatcacgatacaccgtaggcatagattttggtaatcgttgtagcttgatcgaaa 183  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||| |||||||||||| ||||||||||||||||    
T  4816591 ttatttttatcacttattttcaaaatctcaattccattcaacgtgacatcacgatataccgaaggcataggttttggtaatcgatgtagcttgatcgaaa 4816492  T
Q  184 gattaactttttcaatttgagagcttccgccttgag 219  Q
    ||||||||||||||||||||||||||||||| ||||    
T  4816491 gattaactttttcaatttgagagcttccgccatgag 4816456  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 84 - 211
Target Start/End: Original strand, 4863690 - 4863817
Alignment:
Q  84 ttatatttatcacttattttcaaaatctcgattccattcaacgtgacatcacgatacaccgtaggcatagattttggtaatcgttgtagcttgatcgaaa 183  Q
    |||| |||||| |||||||| ||||||||||||||||||||||| |||||||| ||    |||  ||| |  ||||||||| |||||| ||||| |||||    
T  4863690 ttatttttatcgcttattttaaaaatctcgattccattcaacgtaacatcacggtattttgtaaacatggtctttggtaattgttgtaacttgagcgaaa 4863789  T
Q  184 gattaactttttcaatttgagagcttcc 211  Q
    | |||||| |||||||||||||||||||    
T  4863790 ggttaactctttcaatttgagagcttcc 4863817  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 46 - 136
Target Start/End: Complemental strand, 4712437 - 4712350
Alignment:
Q  46 gtataatgtgtttgttgggattcaaaccagcgagattgttatatttatcacttattttcaaaatctcgattccattcaacgtgacatcacg 136  Q
    |||||||||||||| ||||||||||||||||||||   |||| ||||||||||||||| |||||||| ||||||||||   ||||||||||    
T  4712437 gtataatgtgtttgatgggattcaaaccagcgaga---ttatttttatcacttattttgaaaatctcaattccattcattatgacatcacg 4712350  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 89 - 211
Target Start/End: Original strand, 4630700 - 4630822
Alignment:
Q  89 tttatcacttattttcaaaatctcgattccattcaacgtgacatcacgatacaccgtaggcatagattttggtaatcgttgtagcttgatcgaaagatta 188  Q
    ||||||||||||||| |||||||| |||||||||| |  |||||||||||| |  ||  | |||| || ||||  |||| | |||||||| |||||||||    
T  4630700 tttatcacttattttgaaaatctcaattccattcagcaggacatcacgatatattgtgtgtatagtttctggtgctcgtcgaagcttgattgaaagatta 4630799  T
Q  189 actttttcaatttgagagcttcc 211  Q
    ||| |||||||||||||||||||    
T  4630800 actctttcaatttgagagcttcc 4630822  T

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Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 124
Target Start/End: Complemental strand, 4846365 - 4846299
Alignment:
Q  55 gtttgttgggattcaaaccagcgagattgttatatttatcacttattttcaaaatctcgattccattcaa 124  Q
    ||||||||||||||| |||||| ||||||||   ||||||||||| ||| ||||||||||||||||||||    
T  4846365 gtttgttgggattcataccagccagattgtt---tttatcacttactttgaaaatctcgattccattcaa 4846299  T

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Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 4643445 - 4643494
Alignment:
Q  75 gcgagattgttatatttatcacttattttcaaaatctcgattccattcaa 124  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||||||||||    
T  4643445 gcgagattgttatttttgtcacttatttttaaaatctcgattccattcaa 4643494  T

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Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 4846268 - 4846215
Alignment:
Q  158 tggtaatcgttgtagcttgatcgaaagattaactttttcaatttgagagcttcc 211  Q
    |||||||||||| |||||||| |||||||||||| ||||||||| |||||||||    
T  4846268 tggtaatcgttgaagcttgattgaaagattaactctttcaatttcagagcttcc 4846215  T

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Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 135
Target Start/End: Original strand, 4672435 - 4672495
Alignment:
Q  75 gcgagattgttatatttatcacttattttcaaaatctcgattccattcaacgtgacatcac 135  Q
    |||||||| |||| ||||||||||| ||| ||||||||||||||||| || ||||||||||    
T  4672435 gcgagattattatttttatcacttactttgaaaatctcgattccatttaatgtgacatcac 4672495  T

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Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 4697437 - 4697390
Alignment:
Q  164 tcgttgtagcttgatcgaaagattaactttttcaatttgagagcttcc 211  Q
    ||||||||||||||| |||||||||| | |||||||||||||||||||    
T  4697437 tcgttgtagcttgattgaaagattaagtctttcaatttgagagcttcc 4697390  T

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Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 4666694 - 4666740
Alignment:
Q  75 gcgagattgttatatttatcacttattttcaaaatctcgattccatt 121  Q
    ||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  4666694 gcgagattgttatttttgtcacttatttttaaaatctcgattccatt 4666740  T

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Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 4697512 - 4697466
Alignment:
Q  89 tttatcacttattttcaaaatctcgattccattcaacgtgacatcac 135  Q
    ||||||| ||||||||||||||||||| |||||||| ||||||||||    
T  4697512 tttatcatttattttcaaaatctcgatgccattcaatgtgacatcac 4697466  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 4647378 - 4647420
Alignment:
Q  161 taatcgttgtagcttgatcgaaagattaactttttcaatttga 203  Q
    ||||||||| |||||||| |||||||||||| |||||||||||    
T  4647378 taatcgttgaagcttgattgaaagattaactctttcaatttga 4647420  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 4672526 - 4672571
Alignment:
Q  166 gttgtagcttgatcgaaagattaactttttcaatttgagagcttcc 211  Q
    |||| ||||| || |||||||||||| |||||||||||||||||||    
T  4672526 gttgaagcttaatagaaagattaactctttcaatttgagagcttcc 4672571  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 4661636 - 4661688
Alignment:
Q  154 attttggtaatcgttgtagcttgatcgaaagattaactttttcaatttgagag 206  Q
    |||||| |||| |||| |||||||| ||||||| |||| ||||||||||||||    
T  4661636 attttgataatggttgaagcttgattgaaagatcaactctttcaatttgagag 4661688  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 18926078 - 18926021
Alignment:
Q  75 gcgagattgttatatttatcacttattttcaaaatctcgattccattcaacgtgacat 132  Q
    ||||||||||||| ||| ||||||||||||||||||||||| |||||||| |||||||    
T  18926078 gcgagattgttatttttgtcacttattttcaaaatctcgatcccattcaatgtgacat 18926021  T

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