View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16392_low_20 (Length: 235)
Name: NF16392_low_20
Description: NF16392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16392_low_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 33528566 - 33528347
Alignment:
| Q |
1 |
ataaagaatactcacattttgatgatggttgcaacaagttgtgagaggcctcatgatcaacccaatcataagacttaatgtgcatttgccctaatagaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33528566 |
ataaagaatactcacattttgatgatggttgcaacaagttgtgagaggcctcatgatcaacccaatcataagacttaatgtgcatttgccctaatagaag |
33528467 |
T |
|
| Q |
101 |
tttgctgaaaacagtcatgcctgggtggttatggaggggaatgactcctctttcaggtaggaaaaagatacatagctgcacaaacaaaatgcaataatag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33528466 |
tttgctgaaaacagtcatgcctgggtggttatggaggggaatgactcctctttcaggtaggaaaaagatacatagctgcacaaacaaaatgcaataatag |
33528367 |
T |
|
| Q |
201 |
caaattgaatgagtaattat |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
33528366 |
caaattgaatgagtaattat |
33528347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 33537484 - 33537419
Alignment:
| Q |
11 |
ctcacattttgatgatggttgcaacaagttgtgagaggcctcatgatcaacccaatcataagactt |
76 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||| |||||| |||||||||||| ||||||||| |
|
|
| T |
33537484 |
ctcacattttgatggttgttgcaacaagttgtgagatgcctcacgatcaacccaataataagactt |
33537419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 32 - 180
Target Start/End: Original strand, 9691995 - 9692143
Alignment:
| Q |
32 |
caacaagttgtgagaggcctcatgatcaacccaatcataagacttaatgtgcatttgccctaatagaagtttgctgaaaacagtcatgcctgggtggtta |
131 |
Q |
| |
|
|||||| ||||||||| | ||| |||||||||||||||||||||||||||||||||| || || | ||| || |||||||||||||| |||||||||||| |
|
|
| T |
9691995 |
caacaaattgtgagagacatcaggatcaacccaatcataagacttaatgtgcatttgtcccaacaaaagcttactgaaaacagtcattcctgggtggtta |
9692094 |
T |
|
| Q |
132 |
tggaggggaatgactcctctttcaggtaggaaaaagatacatagctgca |
180 |
Q |
| |
|
|| || |||||||||||| || |||||||||||| ||||||||||||| |
|
|
| T |
9692095 |
tgaagaggaatgactccttttgaaggtaggaaaaaaatacatagctgca |
9692143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University