View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16392_low_5 (Length: 513)
Name: NF16392_low_5
Description: NF16392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16392_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 14 - 458
Target Start/End: Original strand, 31805953 - 31806397
Alignment:
| Q |
14 |
gagaagaaatcataaccctaattttcctccttttttatatttagagataaatttgaatctctaaactagagaaaagaacctaaaggagagataacattat |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31805953 |
gagaagaaatcataaccctaattttcctccttttttatatttagagataaatttgaagctctaaactagagaaaagaacctaaaggagagataacattat |
31806052 |
T |
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| Q |
114 |
ataatctatgttcaaatatatactaaaaatgttattctcatccatctcaatagaaaaacaatggaattgtatgtctatattgccatgattggcgttttgt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31806053 |
ataatctatgttcaaatatatactaaaaatgttattctcatccatctcaatagaaaaacaatggaattgtatgtctatattgccatgattgacgttttgt |
31806152 |
T |
|
| Q |
214 |
tccggccttaatggtgtttcatcacggctgtaacggtgtttcgacgtgatttttgtccctttataaaaactaaagaaaacggaaataacatatacatata |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
31806153 |
tccggccttaatggtgtttcatcacggctgtaacggtgtttcgacgtgatttttgtccctttgtaaaaactaaagaaaacggaaatgacatatacatata |
31806252 |
T |
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| Q |
314 |
catttttgtctcgtcttttttctcgannnnnnnnnnaaaccttgtttatttccatccacttacgatgttcacgaacatccatttttctctaattgaaaaa |
413 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31806253 |
catttttgtctcgtcttttttctcgattttttttttaaaccttgtttatttccatccacttacaatgttcacgaacatccatttttctctaattgaaaaa |
31806352 |
T |
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| Q |
414 |
taagtggcattttaattagaatgcgtaattaattatatctaggtt |
458 |
Q |
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| T |
31806353 |
taagtggcattttaattagaatgcgtgattaattatatctaggtt |
31806397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 101 - 191
Target Start/End: Complemental strand, 33049184 - 33049094
Alignment:
| Q |
101 |
gagataacattatataatctatgttcaaatatatactaaaaatgttattctcatccatctcaatagaaaaacaatggaattgtatgtctat |
191 |
Q |
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|||||||| || | |||| ||||||||||||| |||||||||||| ||| |||||||||||||| |||||| ||||| ||| | ||||||| |
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| T |
33049184 |
gagataaccttctgtaatttatgttcaaatatgtactaaaaatgtgattttcatccatctcaattgaaaaataatgggattctctgtctat |
33049094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 31742932 - 31742876
Alignment:
| Q |
115 |
taatctatgttcaaatatatactaaaaatgttattctcatccatctcaatagaaaaa |
171 |
Q |
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| T |
31742932 |
taatatatgttcaaatatgtattaaaaatgtgattttcatccatctcaattgaaaaa |
31742876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 14867355 - 14867424
Alignment:
| Q |
102 |
agataacattatataatctatgttcaaatatatactaaaaatgttattctcatccatctcaatagaaaaa |
171 |
Q |
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| T |
14867355 |
agataacatcatgtaatttatgttcaaatatgtactaaaaatgtgattttcatccatctcaattgaaaaa |
14867424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 55606461 - 55606514
Alignment:
| Q |
216 |
cggccttaatggtgtttcatcacggctgtaacggtgtttcgacgtgatttttgt |
269 |
Q |
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| T |
55606461 |
cggccgtaacggtgtttcatcgcggctgtaacggtgtttcgtcgtgatttttgt |
55606514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 11440656 - 11440587
Alignment:
| Q |
102 |
agataacattatataatctatgttcaaatatatactaaaaatgttattctcatccatctcaatagaaaaa |
171 |
Q |
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|||||||||||| |||| |||| |||||||| |||||||||| | ||| ||||| |||| ||| |||||| |
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| T |
11440656 |
agataacattatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatcttaattgaaaaa |
11440587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 53527127 - 53527059
Alignment:
| Q |
103 |
gataacattatataatctatgttcaaatatatactaaaaatgttattctcatccatctcaatagaaaaa |
171 |
Q |
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| T |
53527127 |
gataacattatgtattctatgttcaattctctactaaaaatgtcattttcatccacctcaattgaaaaa |
53527059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 24699898 - 24699967
Alignment:
| Q |
102 |
agataacattatataatctatgttcaaatatatactaaaaatgttattctcatccatctcaatagaaaaa |
171 |
Q |
| |
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|||||||||||| |||| ||| |||||||||||| |||||| | ||| ||||| |||||||| |||||| |
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| T |
24699898 |
agataacattatgtaatatattatcaaatatatacgaaaaatataattttcatctatctcaattgaaaaa |
24699967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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