View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16392_low_6 (Length: 465)
Name: NF16392_low_6
Description: NF16392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16392_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 17 - 449
Target Start/End: Original strand, 50764440 - 50764872
Alignment:
| Q |
17 |
tattattaaagaggttaagattcagtcatgaagctgatcaggtggatgaagacatgattgagactgttattctatgtttgtggaggatgaatgtttttaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50764440 |
tattattaaagaggttaagattcagtcatgaagctgatcaggtggatgaagacatgattgagactgttattctatgtttgtggaggatgaatgtttttaa |
50764539 |
T |
|
| Q |
117 |
tcagttgtaattcggggctttttgcaaaagtttaggttcatagtcaaatgttagacaaattcagaatgagatccatgctaaaagttttcttcaaattaga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50764540 |
tcagttgtaattcggggctttttgcaaaagtttaggttcatagtcaaatgttagacaaattcagaatgagatccatgctaaaagttttcttcaaattaga |
50764639 |
T |
|
| Q |
217 |
tgttggtgaagcaatttgagaggcttatcaagttgttttctatcactttgattcatttagggttttctttggtcattcttagcttattgtcaaatgtttc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50764640 |
tgttggtgaagcaatttgagaggcttatcaagttgttttctatcactttgattcatttagggttttctttggtcattcttagcttattgtcaaatgtttc |
50764739 |
T |
|
| Q |
317 |
ttggcttatttccatagttgcaactggttgctgcttctgttatgtcatcgtgcagctttattctctgtggttgttttgtgttcagtaaattattcaccaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50764740 |
ttggcttatttccatagttgcaactggttgctgcttctgttatgtcatcgtgcagctttattctctgtggttgttttgtgttcagtaaattattcaccaa |
50764839 |
T |
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| Q |
417 |
tgtgcagattttccttctattcgttcatgcaat |
449 |
Q |
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| T |
50764840 |
tgtgcagattttccttctattcgttcatgcaat |
50764872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 35100925 - 35100847
Alignment:
| Q |
51 |
tgatcaggtggatgaagacatgattgagactgttattctatgtttgtggaggatgaatgtttttaatcagttgtaattc |
129 |
Q |
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|||||||||| ||||||||||||| | |||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35100925 |
tgatcaggtgaatgaagacatgataggcactggtattctatatttgtggaggatgaatgtttttaatcagttgtaattc |
35100847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 27 - 239
Target Start/End: Original strand, 35153354 - 35153576
Alignment:
| Q |
27 |
gaggttaagattcagtcatgaagctgatcaggtggatgaagacatgattgagactgttattctatgtttgtggaggatgaatgtttttaatcagttgtaa |
126 |
Q |
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||||||| | ||| |||||||| ||| || |||| ||||||||||||| | ||| ||||||||||||||||||||||||||||| ||| ||||| || |
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| T |
35153354 |
gaggttacggttctgtcatgaacctggtccggtgaatgaagacatgataagtattgt-attctatgtttgtggaggatgaatgttttgaattagttgcaa |
35153452 |
T |
|
| Q |
127 |
ttcggggctttttgcaa------aagtttaggttcat---agtcaaatgttagacaaattcagaatgagatccatgctaaaagttttcttcaaattagat |
217 |
Q |
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|||||| ||| | ||| |||| | ||||||| |||| ||||| |||||||||||||||||| ||||||| |||||||||||||||| |||| |
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| T |
35153453 |
ttcgggacttctctcaacttcataagtcttggttcatcatagtctcatgttggacaaattcagaatgaga-ccatgcttaaagttttcttcaaataagat |
35153551 |
T |
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| Q |
218 |
g---ttggtgaagcaatttgagagg |
239 |
Q |
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| ||||||||||||||||||||| |
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| T |
35153552 |
gttattggtgaagcaatttgagagg |
35153576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 35040631 - 35040556
Alignment:
| Q |
54 |
tcaggtggatgaagacatgattgagactgttattctatgtttgtggaggatgaatgtttttaatcagttgtaattc |
129 |
Q |
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||||||| ||||||||||||| | ||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
35040631 |
tcaggtgaatgaagacatgatagtcactgttattctatgtttgtagaggatgaatgtatttaatcagttgtaattc |
35040556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 30696143 - 30696215
Alignment:
| Q |
17 |
tattattaaagaggttaagattcagtcatgaagctgatcaggtggatgaagacatgattgagactgttattct |
89 |
Q |
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||||||||| ||||||||||||| |||||||| ||||||||||| ||||||||||||||| ||||||||||| |
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| T |
30696143 |
tattattaatgaggttaagattcggtcatgaacctgatcaggtgaatgaagacatgattggtactgttattct |
30696215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 35092237 - 35092156
Alignment:
| Q |
27 |
gaggttaagattcagtcatgaagctgatcaggtggatgaagacatgattgagactgttattctatgtttgtggaggatgaat |
108 |
Q |
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||||||| | ||| |||||||| ||||||||||| ||||||| || | | ||||||||| |||||||||||||| ||||| |
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| T |
35092237 |
gaggttatggttctgtcatgaacctgatcaggtgaatgaagatatcctagttactgttattgtatgtttgtggagggtgaat |
35092156 |
T |
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