View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16392_low_7 (Length: 437)
Name: NF16392_low_7
Description: NF16392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16392_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 195 - 431
Target Start/End: Complemental strand, 4007003 - 4006765
Alignment:
| Q |
195 |
gttgaagtcaaaggggttaggttcagctcttgctttcttctgaccttcagctgttccggtcctgctctgatgttctagttctgctgcagtgttgtggcat |
294 |
Q |
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| T |
4007003 |
gttgaagtcaaaagggttaggttcagctgttgctttcttctgaccttcagctgttccagtcctgctctgatgttctagttctgctgcagtgttgtggcat |
4006904 |
T |
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| Q |
295 |
tttgggatccgtttgacgttgtatcttgcttgctggactgctagtgttgcatcaatttcgtat--ttttatcatttgtagttgtcttggctgcttggcgt |
392 |
Q |
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| T |
4006903 |
tttgggatccgtttgacgttgtatcttgcttgctggactgctagtgttgcatcaatttcgtatttttttatcatttgtagttgtcttggctgcttggcgt |
4006804 |
T |
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| Q |
393 |
tcaagccctttggggcgttggtattattttgatgatgtc |
431 |
Q |
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| T |
4006803 |
tcaagccctttggggcgttggtattattttgttgatgtc |
4006765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 4571712 - 4571788
Alignment:
| Q |
27 |
ttacttgccatcattcttggttcttcatttggtacatctttgattcttacatagtttggacaaactgagcctggagat |
104 |
Q |
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| T |
4571712 |
ttacttgccatcattcttggttcttc-tttgatacatctttgattcttacataggtttgacaaactgatcctggagat |
4571788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 10220223 - 10220263
Alignment:
| Q |
65 |
tttgattcttacatagtttggacaaactgagcctggagata |
105 |
Q |
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| T |
10220223 |
tttggttcttacataggttggacaaactgatcctggagata |
10220263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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