View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16392_low_9 (Length: 405)
Name: NF16392_low_9
Description: NF16392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16392_low_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 146 - 384
Target Start/End: Original strand, 587517 - 587755
Alignment:
| Q |
146 |
tgtcatgccttgtggtcttggagaaacagttgagtcatgatagtgaagctacaatgcctcttaactcttggaacaaggagggttaattgttacatggaca |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
587517 |
tgtcatgccttgtggtcttggagaaacagttgagtcatcatagtgaagctacaatgcctcttaactcttggaacaaggagggttaattgttacatggaca |
587616 |
T |
|
| Q |
246 |
atcaatataatcatcctatgatcgctcgtagtaggatagtggtggagaatatatcttagaagccaccggagattagatcgatccatcttaatactgatgg |
345 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
587617 |
atcaatataatcatcctatgatcgctagtagtaggatagtggtggagaatatatcttagaagccaccggagattggatcgatccatcttaatactgatgg |
587716 |
T |
|
| Q |
346 |
tgtgtctaaagggggatatatagctggttgtggaggagt |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
587717 |
tgtgtctaaagggggatatatagctggttgtggaggagt |
587755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 587352 - 587480
Alignment:
| Q |
11 |
agaatattgtccgcttgcggtatatggttgaatacaattaggattaatcaaagagagaacttttttgaagcaaatttgcagaattggattgacttaaata |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
587352 |
agaatgttgtccgcttgcggtatatggttgaatacaattaggattaatcaaagagagaacttttttgaagcaaatttgcagaattggattgacttaaata |
587451 |
T |
|
| Q |
111 |
tgaacatggagttgggcatgaatgataca |
139 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
587452 |
tgaacatggagttgggcatgaatgataca |
587480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 284 - 387
Target Start/End: Complemental strand, 33691916 - 33691813
Alignment:
| Q |
284 |
gtggtggagaatatatcttagaagccaccggagattagatcgatccatcttaatactgatggtgtgtctaaagggggatatatagctggttgtggaggag |
383 |
Q |
| |
|
|||||||||||||||| || ||||||||| | || ||||||||||||||||||| |||| | ||||||||||||||||||| |||||||||||||| |
|
|
| T |
33691916 |
gtggtggagaatatatattggaagccaccaaatataggatcgatccatcttaataccgatgacgcatctaaagggggatatatagttggttgtggaggag |
33691817 |
T |
|
| Q |
384 |
tgtt |
387 |
Q |
| |
|
|||| |
|
|
| T |
33691816 |
tgtt |
33691813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 33 - 120
Target Start/End: Complemental strand, 32058052 - 32057965
Alignment:
| Q |
33 |
tatggttgaatacaattaggattaatcaaagagagaacttttttgaagcaaatttgcagaattggattgacttaaatatgaacatgga |
120 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
32058052 |
tatggttgaatacagttattattaatcaaagagagaacttttttgaagcagatttgcagcattggattggcttaaatatgaacatgga |
32057965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 149 - 339
Target Start/End: Complemental strand, 32057924 - 32057725
Alignment:
| Q |
149 |
catgccttgtggtcttggagaaaca-gttgagtcatgatagtgaagctacaatgcctcttaactcttggaa--------caaggagggttaattgttaca |
239 |
Q |
| |
|
||||||||||||| |||||||||| ||||||| |||||||| ||||||| ||| |||||||||| ||||| ||| ||||||||||||||| | |
|
|
| T |
32057924 |
catgccttgtggttatggagaaacaagttgagttatgatagtaaagctacgatgtctcttaactcatggaaggagattacaacgagggttaattgttaga |
32057825 |
T |
|
| Q |
240 |
tggacaatcaatataatcatcctatgatcgctcgtagtaggatagtggtggagaatatatcttagaagccaccggagattagatcgatccatcttaatac |
339 |
Q |
| |
|
||||| ||||||||| |||||| |||| ||| |||||||| ||||||||||||||| |||| |||||||| |||||| ||| ||||| ||| ||||| |
|
|
| T |
32057824 |
tggactatcaatatattcatcccctgattgctaatagtaggagagtggtggagaatatttcttggaagccactggagataggatggatccgtctcaatac |
32057725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 29 - 121
Target Start/End: Complemental strand, 26799390 - 26799298
Alignment:
| Q |
29 |
ggtatatggttgaatacaattaggattaatcaaagagagaacttttttgaagcaaatttgcagaattggattgacttaaatatgaacatggag |
121 |
Q |
| |
|
|||||||||||||||||| || | ||| |||||||| ||| ||||||||||||| |||||||| ||||||||||||||||| ||| ||||||| |
|
|
| T |
26799390 |
ggtatatggttgaatacagttggtatttatcaaagaaagagcttttttgaagcatatttgcagcattggattgacttaaatttgagcatggag |
26799298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 26799187 - 26799151
Alignment:
| Q |
349 |
gtctaaagggggatatatagctggttgtggaggagtg |
385 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
26799187 |
gtctaaagggggatttatagctggtcgtggaggagtg |
26799151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 26799280 - 26799236
Alignment:
| Q |
173 |
agttgagtcatgatagtgaagctacaatgcctcttaactcttgga |
217 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||| |||| |
|
|
| T |
26799280 |
agttgagtcatgatagtcaagctatgatgcctcttaactcgtgga |
26799236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University