View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16393_high_2 (Length: 442)
Name: NF16393_high_2
Description: NF16393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16393_high_2 |
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| [»] scaffold0227 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 20 - 432
Target Start/End: Original strand, 29539180 - 29539592
Alignment:
| Q |
20 |
caatgtgcattttgaacagtgatatatcgcagtcaagttcaaatcaaaaagatgagaatcaagcaaaagtaactggtttcgtttcgaacaatcgaggatt |
119 |
Q |
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| T |
29539180 |
caatgtgcattttgaacagtgatatatcgcagtcaagttcaaatcaaaaagatgagaatcaagcaaaagtaactggtttcgtttcgaacaatcgaggatt |
29539279 |
T |
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| Q |
120 |
tcataaaagtaattcagattctgaaacgaaacaggaaaatcaggtaagttcatttactttttagtaatttcttaatttaaatatcattttctatcattcc |
219 |
Q |
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| T |
29539280 |
tcataaaagtaattcagattctgaaacgaaacaggaaaatcaggtaagttcatttactttttagtaatttcttaatttaaatatcattttctatcattcc |
29539379 |
T |
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| Q |
220 |
actgaacaaatgatttgtgtaattcttagctgcatttgtcataatattttggtacttggcagggtgccatcactcacctttcagaacaaatttcatcgct |
319 |
Q |
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| T |
29539380 |
attgaacaaatgatttgtataattcttagctgcatttgccataatattttggtacttggcagggtgccatcactcacctctcagaacaaatttcatcgct |
29539479 |
T |
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| Q |
320 |
acatgatagaatgggcgagtttacaaatcgtattgaagagctgaactcaaagttaaccatcaagaaaaattgttcaagccaacaaaatatgtccgtgcaa |
419 |
Q |
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| T |
29539480 |
acatgatagaatgggcgagtttacaaatcgtattgaagagctgaactcaaagttaaccatcaagaaaaattgtccaattcaacaaaatatgtccgtgcaa |
29539579 |
T |
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| Q |
420 |
gccgagtcctatg |
432 |
Q |
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| T |
29539580 |
gccgagtcctatg |
29539592 |
T |
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Back To:
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 297 - 412
Target Start/End: Original strand, 28078110 - 28078225
Alignment:
| Q |
297 |
ctttcagaacaaatttcatcgctacatgatagaatgggcgagtttacaaatcgtattgaagagctgaactcaaagttaaccatcaagaaaaattgttcaa |
396 |
Q |
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| T |
28078110 |
ctttcagaacagatttctgccctcaatgatagaatggatgaatttacaaatcgtattgaagagctgaattgcaagctaacctttaagaataattctccaa |
28078209 |
T |
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| Q |
397 |
gccaacaaaatatgtc |
412 |
Q |
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| T |
28078210 |
gccagcaaaatatgtc |
28078225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 412
Target Start/End: Complemental strand, 18635 - 18547
Alignment:
| Q |
324 |
gatagaatgggcgagtttacaaatcgtattgaagagctgaactcaaagttaaccatcaagaaaaattgttcaagccaacaaaatatgtc |
412 |
Q |
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| T |
18635 |
gatagaatggatgaatttacaaatcgtattgaagagctgaattgcaagctaacctttaagaataattctccgagccaacaaaatatgtc |
18547 |
T |
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